Gene detail

Gene detail information of Glyur001696s00038370

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08590.1	2.00E-27	Leucine-rich receptor-like protein kinase family protein
NR	KEH36629.1	9.30E-86	LRR receptor-like kinase [Medicago truncatula]
COG	YP_004775215.1	2.00E-30	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGT6\|EFR_ARATH	2.00E-39	LRR receptor-like serine/threonine-protein kinase EFR (Precursor)
trEMBL	tr\|A0A072V3M5\|A0A072V3M5_MEDTR	3.00E-86	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH36629.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01696	23341	24495	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001696s00038370.1	PF08263.7	LRRNT_2	8	49	2.80E-11
Glyur001696s00038370.1	PF13504.1	LRR_7	102	115	6.5
Glyur001696s00038370.1	PF12799.2	LRR_4	127	162	4.30E-07

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.359
SRR1783600	control	0.362
SRR1783602	moderate drought stress	0.045
SRR1811619	moderate drought stress	0.169

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.142
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.995
DRR006524	Root Summer glycyrrhizin low producing strain	1.912
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.591
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.603

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.741
SRR2868004	Drought Stress (root)	1.339
SRR2967015	Control (root)	2.721

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.797
SRR9715740	Leaf	4.572
SRR9715741	Leaf	7.110
SRR9715739	Root	1.436
SRR9715742	Root	2.404
SRR9715743	Root	1.198

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.176
SRR8749028	MeJA induced 9h	0.177
SRR8749029	MeJA induced 9h	0.206
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.177

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.466
SRR8400027	Control - Root	0.963