Gene detail

Gene detail information of Glyur001694s00031563

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06510.1	0	Glycosyl hydrolase superfamily protein
NR	KEH32358.1	0	beta-glucosidase [Medicago truncatula]
COG	YP_003669060.1	3.00E-49	glycoside hydrolase family 1 [Staphylothermus hellenicus DSM 12710]
Swissprot	tr\|Q8L6H7\|SFR2_ORYSJ	0	Beta-glucosidase-like SFR2, chloroplastic
trEMBL	tr\|A0A072UTJ9\|A0A072UTJ9_MEDTR	0	Beta-glucosidase {ECO:0000313\|EMBL:KEH32358.1}

Sequence

Transcript Sequence

>Glyur001694s00031563.1
ATGACGGTAGTGTCGCTCTTCCTCACCGCCACCAAACTCGTCGGAGCTTTTGTCACTCTCACCGTCGCCGCCAATGCCTTCTCTTTCTCTCGTTTCCGCAACAAGAACCTTCGCCCTTTCCGCTCCCCCATCGATGAATCCTCCGACACTCTCGCCGTCTTCGACATCACCGAAGGAGAAAATGGATTTTTCTTTGGTCTGGCGACAGCACCAGCACATGTTGAGGACAGGCTTGATGATGCCTGGATTCAGTTTGCAGAACAAGAGAGTGGTGGTGCTGAGTCCAAGCAGGAGGCGGATGCTTTGATGGGCACCGCCGGTGACGGCGGGTCTCATCAAGCTGTATCATCTCTACAACATGCCAGTAGTAGTAGTCAGGTTAAAAAGGGCAAGAAGCCTCTTAAGGTCGCTATGGAGGCCATGATTAGAGGATTTGAGAAGTACATGGAAGTAGAGGGGCAAGAAGGAGGAGAGGAAGAAGAACAACATCCCAAAGTTACTGCTTGGCATAATGTTCCACACCCGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGATACAGAACTAAAATTGGCCAAGGGTACTGGTGTTACTGTTTTTCGCATGGGAATAGATTGGTCAAGAATCATGCCACAGGAGCCAGTAAACGGCCTTAAAGAATCTGTTAACTATGCTGCATTGGAGCGTTACAAATGGATTATCAATAGAGTTCGATCATATGGAATGAAGGTGATGCTCACTCTTTTTCATCACTCACTTCCACCCTGGGCTGGTGATTATGGAGGTTGGAAGCTGGAAAAGACAGTGGACTATTTCATGGACTTTACCAGGCTTGTTGTAAACAGTGTGTCAGATTTANTAGACTATTGGGTAACATTTAATGAGCCCCATGTCTTCTGTATGCTTACTTATTGTGCTGGCACTTGGCCTGGTGGTGATCCTAATATGCTGGAGGCCGCTACTTCAGCACTTCCTACTGGNGTTTTCCAGCAGGCCATGCATTGGATGTCTATTGCACACTCAAAGGCATATGATTACATCCATGAACGCAGCAACTCACTAAATCCAATAGTTGGTGTTGCACATCATGTGTCGTTTATGCGACCCTATGGTCTGTTTGATGTCGCTGCTGTNACACTGGCTAATTCATTGACTCTCTTCCCATACATCGATGGAATATCTGACAAGCTGGACTTCATAGGCATCAACTACTATGGCCAGGAAGTGGTTTCGGGTGCTGGCCTGAAGCTGGTGGAAAATGACGAGTACAGTGAATCTGGTCGTGGGGTATATCCTGATGGCTTATATCGCATGTTGCTTCAGTTCCATGAAAGATACAAACATCTTAATATCCCCTTCGTCATTGCTGAAAATGGGGTTTCAGATGAGACAGATTTGATCCGCCGGCCATATATCTTGGAGCATTTGCTTGCTGTTTATGCNGCTATGATCATGGGTGTGCCTGTGCTTGGTTACCTGTTCTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTTGCAGTTGACCGGGCAAATAATCTTGCACGGATTCCCCGCCCTTCTTACCATCTGTTTTCTAAAATTGTGAATACNGGTAAAGTTACACGTGAAGATCGTGAAGTAGCATGGGATGAACTTCAAAGAGCTGCTAAAGAGAAGAAAACAAGACCATTTTATCGGGCTGTGGATAAAAATGGTTTAATGTATGCAGGTGGACTTGATGAACCTATACAGCGACCTTATATAGAAAGAGATTGGCGGTTTGGTCATTATCAGATGGATGGTCTCCAGGATCACTTGAGCCGCTTCTCAAGATTCATCATTCGACCATTCTCCCTAGAAAGGAAAAAGAAACCTCAGAAGAAGAATGCCAAATTAATGCGTTCAGTTCTGTTCATCTGCGATGTTTACATTCATGCCGGGTTCCAATTACCAAGCACTGGATTCTGCACTTTCCGGAATCCCAACAACTATGAGATCATGCCTAGTAATTCTCTATGTTTCATTCTCTTAACTATTACTACCTTCATTAAAGCAGCAACATCAGAAATAAATGTTGAAGAAACCTANGAATCTGATAGAATAATAGATCTTCCCGGGCAGCCTTCAAACCCGTCAGTTTCACACTTTTCAGGTTACATCACAGTCAATGAAGACCATGGGAGGGCCCTTTTCTACTGGTTCTTTGAAGCTCAATCTCAACCGTCCAACAAGCCTCTCCTTCTCTGGCTTAATGGAGGACCCGGATGCTCCTCCATTGGGTTTGGTGCAGTTGTTGAGATAGGACCTCTTTTAGTCAACAAAAATGGTGAAGGACTATCTTCCAACACATACTCCTGGAACCAAGAAGCAAATTTGTTATTTGTGGAGTCCCCTGTTGGGGTTGGCTTTTCTTACACTAACACGTCTTCTGATCTTACCATTTTAGAGGATCATATTGTGGCTGAGGATGCCTACGATTTCTTGGTGAATTGGCTACAAAGATTCCCACAGTTTAAATCCCGGGACTTTTATATAGCAGGAGAAAGCTATGCTGGAAATCCAGAGACTGAAGATTACTATGACTATAAAGGCCTGCTAGAATATGCATGGAGTCATGCAGTTATATCAGACCAGCAATACGACAAGGCAAAACAAGTATGTGATTTCAAACAATTCCAATGGTCTAATGAGTGCAACCAGGCCATGAATGAAGTCTTCCAAGATTACTCAGAAATTGACATATACAACATTTATGCCCCGGCGTGTCGTCTAAATAGCACATCCTCAGTAGCCCCTAATCATAGTAACAGTAACGGCCCTGCTGAATCACTTACAAAGGTGAGAAATGATCATAGAATAAGGAGGATGAGAATTTTTGGGGGCTATGACCCGTGCTATTCCACATACGCAGAAGAATATTTNAATAGGATAGATGTTCAGTCATCTTTACATGCAAATACTGAGANAGTAAACACTAACATAACATGGAAGGTTTGCAATGATTCCATATTGAGGACTTACAACTTCTCTGTTTTTTCGGTCCTACCCATCTACACCAAACTCATCAAGGGTGGCCTTAAGATATGGATTTACAGTGGAGATGCAGATGGGAGAATACCTGTGATAGGGACACGATATTGCATTGAGGCTCTCGGCTTGCCTCTCAAATCAAGTTGGCGGTCTTGGTACCACGATAATCAGGTTGGAGGAAGGATAGTGGAGTATGAAGGGGTGACATATGTGACAGTGAGAGGAGCTGGTCACTTGGTGCCTCTCAACAAGCCCAGTGAGGCTCTCTCTCTTATTCATTCTTTTCTAACAGGCGAGCACCTCCCTACTCGTCGATGA

Protein Sequence

>Glyur001694s00031563.1
MTVVSLFLTATKLVGAFVTLTVAANAFSFSRFRNKNLRPFRSPIDESSDTLAVFDITEGENGFFFGLATAPAHVEDRLDDAWIQFAEQESGGAESKQEADALMGTAGDGGSHQAVSSLQHASSSSQVKKGKKPLKVAMEAMIRGFEKYMEVEGQEGGEEEEQHPKVTAWHNVPHPEERLRFWSDPDTELKLAKGTGVTVFRMGIDWSRIMPQEPVNGLKESVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGDYGGWKLEKTVDYFMDFTRLVVNSVSDLXDYWVTFNEPHVFCMLTYCAGTWPGGDPNMLEAATSALPTGVFQQAMHWMSIAHSKAYDYIHERSNSLNPIVGVAHHVSFMRPYGLFDVAAVTLANSLTLFPYIDGISDKLDFIGINYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYKHLNIPFVIAENGVSDETDLIRRPYILEHLLAVYAAMIMGVPVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKIVNTGKVTREDREVAWDELQRAAKEKKTRPFYRAVDKNGLMYAGGLDEPIQRPYIERDWRFGHYQMDGLQDHLSRFSRFIIRPFSLERKKKPQKKNAKLMRSVLFICDVYIHAGFQLPSTGFCTFRNPNNYEIMPSNSLCFILLTITTFIKAATSEINVEETXESDRIIDLPGQPSNPSVSHFSGYITVNEDHGRALFYWFFEAQSQPSNKPLLLWLNGGPGCSSIGFGAVVEIGPLLVNKNGEGLSSNTYSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDHIVAEDAYDFLVNWLQRFPQFKSRDFYIAGESYAGNPETEDYYDYKGLLEYAWSHAVISDQQYDKAKQVCDFKQFQWSNECNQAMNEVFQDYSEIDIYNIYAPACRLNSTSSVAPNHSNSNGPAESLTKVRNDHRIRRMRIFGGYDPCYSTYAEEYXNRIDVQSSLHANTEXVNTNITWKVCNDSILRTYNFSVFSVLPIYTKLIKGGLKIWIYSGDADGRIPVIGTRYCIEALGLPLKSSWRSWYHDNQVGGRIVEYEGVTYVTVRGAGHLVPLNKPSEALSLIHSFLTGEHLPTRR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01694	34547	43921	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006508 proteolysis

molecular_function

GO:0004185 serine-type carboxypeptidase activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001694s00031563.1	PF00232.13	Glyco_hydro_1	186	371	1.40E-30
Glyur001694s00031563.1	PF00232.13	Glyco_hydro_1	392	539	6.60E-24
Glyur001694s00031563.1	PF00450.17	Peptidase_S10	707	854	2.40E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.984
SRR1783600	control	6.008
SRR1783602	moderate drought stress	5.535
SRR1811619	moderate drought stress	5.685

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.906
DRR006520	Root Summer glycyrrhizin high producing strain	10.001
DRR006521	Root Winter glycyrrhizin high producing strain	16.566
DRR006522	Root Winter glycyrrhizin high producing strain	16.482
DRR006523	Root Summer glycyrrhizin low producing strain	9.488
DRR006524	Root Summer glycyrrhizin low producing strain	9.477
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.527
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.746

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.622
SRR2868004	Drought Stress (root)	28.308
SRR2967015	Control (root)	22.533

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.569
SRR9715740	Leaf	20.432
SRR9715741	Leaf	19.886
SRR9715739	Root	7.367
SRR9715742	Root	13.618
SRR9715743	Root	11.511

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.804
SRR8749028	MeJA induced 9h	4.591
SRR8749029	MeJA induced 9h	3.201
SRR8749030	Uninduced	2.966
SRR8749031	Uninduced	0.777
SRR8749032	Uninduced	2.199

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.811
SRR8400027	Control - Root	11.486