Gene detail

Gene detail information of Glyur001694s00031560

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47990.1	1.00E-89	gibberellin 2-oxidase 4
NR	KEH32362.1	0	plant gibberellin 2-oxidase [Medicago truncatula]
COG	YP_006370287.1	3.00E-28	putative iron/ascorbate oxidoreductase [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q9XHM5\|G2OX2_PEA	3.00E-121	Gibberellin 2-beta-dioxygenase 2
trEMBL	tr\|A0A072URT7\|A0A072URT7_MEDTR	0	Plant gibberellin 2-oxidase {ECO:0000313\|EMBL:KEH32362.1}

Sequence

Transcript Sequence

>Glyur001694s00031560.1
ATGGTGTTGGCTTCCCCAAACCCAATTAGGAGTACTGAAAGGGTATTGTTACCAAGTGACCTTATTCCCATAGTGGACCTTAAAGCTGAAAGGTCAGAGGTGAAGAAACTCATTGTAAGAGCCTGTGAGGAGTATGGTTTCTTCAAAGTGGTAAACCATGGAATCAGTGATGAAACAATAGCCAAAATGGAAGAGGCAGGGTTTGGTTTTTTTGCAAAACCAATGGCACAAAAGAAACTGGCCGCACCTGCTTATGGTTGTAAGAACATAGGCTTCAATGGAGACATTGGTGAGGTTGAGTACCTTCTCCTCANTGCCCCCACCTCTTCCTCCATTGCTCAGATTTCCAAAACCATATCTAATATTGACCCATCAAACTTCAGGGTGAGTGCATACACAGAGGCAGTGAGGGAGCTGGCATGTGAGATATTGGAGGTAATGGCAGAGGGGTTGGGGGTCCCGGACACAATGGTTTTCAGCAGGTTGATCAGGGATGTTGATAGTGACTCAGTGCTGAGGCTCAATCACTACCCACCCTGCTGCAGCATAGTTAATAACCGAGATCACTCTTCCAAGGACAAGTCACCCTCCTACAACTCTACCTGCAAGGTTGGGTTTGGGGAGCATTCTGACCCTCAGATCTTGACCATCCTCAGATCCAATGACGTTGGTGGCCTCCAAATCTCACCTCAACATGGTGTGTGGATCCCAGTCAACCCTGACCCCTCAGCTNTCTGTGTTAACGTTGGTGATGTACTAGAGGTGATGACAAATGGAAGATTTGTGAGCGTGAGACATAGGGCAATGACCAACTCACACAGGTCTAGGATGTCAATGGCATATTTTGGGGCTCCACCATTGAATGCAAGGATTGTTGCTCCACCAGTTATGGTTACACCACAGAGGCCCTCTCTCTTCCGACCATTCAGTTGGGCCGACTACAAGGAAGCCACATACTCACTCAGGCTTGGAGACAGCCGCATTGAACTTTTCAGAAAAGTGCAAAGAAAACCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01694	11999	16204	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04125	E1.14.11.13	EC:1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001694s00031560.1	PF14226.1	DIOX_N	22	81	1.80E-16
Glyur001694s00031560.1	PF03171.15	2OG-FeII_Oxy	169	283	1.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.213
SRR1783600	control	0.216
SRR1783602	moderate drought stress	0.112
SRR1811619	moderate drought stress	0.091

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.411
DRR006520	Root Summer glycyrrhizin high producing strain	0.551
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.107
DRR006524	Root Summer glycyrrhizin low producing strain	0.062
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.553
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.735

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.771
SRR2868004	Drought Stress (root)	7.638
SRR2967015	Control (root)	5.070

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.542
SRR9715740	Leaf	0.449
SRR9715741	Leaf	0.884
SRR9715739	Root	1.158
SRR9715742	Root	0.291
SRR9715743	Root	0.358

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.181
SRR8749028	MeJA induced 9h	1.995
SRR8749029	MeJA induced 9h	0.304
SRR8749030	Uninduced	0.622
SRR8749031	Uninduced	0.103
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.828
SRR8400027	Control - Root	1.112