Gene detail

Gene detail information of Glyur001691s00029478.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05010.1	2.00E-132	ethylene-forming enzyme
NR	XP_003549632.1	0	PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase-like [Glycine max]
COG	YP_003514298.1	6.00E-28	2OG-Fe(II) oxygenase [Stackebrandtia nassauensis DSM 44728]
Swissprot	tr\|P31237\|ACCO_ACTDE	0	1-aminocyclopropane-1-carboxylate oxidase
trEMBL	tr\|I1MR21\|I1MR21_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G01330.1}

Sequence

Transcript Sequence

>Glyur001691s00029478.1
GCACAGCAAATAGTTGCAAAGCCTATTAATATTATAAGAGTGAGAGAGAAAAACAGGAGAAAAAAAGAAGAAGAAGCAAATGGAGAACTTTCCAGTAGTTGACATGGGGAAGCTCAACACTGAAGAGAAAGCAACAACCATGGAGATGATAAAAGATGCCTGTGAAAACTGGGGTTTCTTTGAGTTGGTGAACCATGGGATATCACTAGAGTTGATGGACACGGTGGAGAGGCTGACAAAAGATCACTACAAGAAGTGTTTGGAGCAAAGGTTCAAAGAAATGGTAGAGACCAAAGGCCTGGACTCTGCTCAGTCTGAGATCAATGACTTGGACTGGGAAAGCACCTTCTTTTTGCGCCACCTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATCATGATTACAGGAAGGCAATGAAGGAATTTGCACTGGAACNGGAGAAGCTAGCAGAGCTACTCCTTGACTTGCTGTGTGAGAATCTTGGGCTAGAGAAAGGGTATCTGAAGAAGGTCTTCTATGGGTCCAAGGGCCCAAATTTTGGCACCAAAGTTAGCAGCTACCCCCCTTGTCCCAAGCCAGATCTCATCAAGGGCCTCAGAGCCCACACAGATGCTGGTGGCATCATTCTACTCTTCCAAGANGACAAGGTCAGTGGACTTCAGCTCCTCAAAGATGGCCAATGGATTGATGTCCCACCAATGCGCCATTCCATTGTCATCAACCTTGGGGACCAACTTGAGGTAATTACCAACGGCAAGTACAAGAGTGTGATGCACCGNGTAATTGCTCAAACAGATGGTACCAGAATGTCCATAGCCTCATTTTACAACCCAGGAAGTGATGCACTTATCTCTCCAGCACCAGCCTTGGTGAAGGAAGATGAGACAAGCCAAGTCTACCCGAAATTTGTTTTTGACGATTACATGAAGCTCTATGCAGGCCTCAAATTCCAGGACAAAGAGCCAAGATTTGAAGCTATGAAGGACTTGGAGTCCAGCATTAATAATCTAGGTCCCATAGCAACTGTCTAGGCCTGAGATGAGTCATGGGAGCATTATATTTATATATATTATTAGTTTTGTATGTCTACTAAGCTTACTGAATGCTTTTGGTATCTTTGAAATTGGTATGGATGCGCCGATATGTGCATGTGTAGCATAAATCTAAAANATATAGTTCAAAAATAAAATATTAGCTCGATCTGATAGTTTCTGTTTCTGTCTGTGATGGTTAAGTTAGTGTCATGTGTCGATGCACTGTTTNAGAAAGTAACCCGATCTTAGCCTTTTTTTTTTTAAGGAATTCCCACTATTCTTCTTTGGCTTATTATGGTTTGGAATAATCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01691	30173	32078	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05933	E1.14.17.4	EC:1.14.17.4	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001691s00029478.1	PF14226.1	DIOX_N	5	96	3.30E-17
Glyur001691s00029478.1	PF03171.15	2OG-FeII_Oxy	158	253	7.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.126
SRR1783600	control	13.259
SRR1783602	moderate drought stress	12.287
SRR1811619	moderate drought stress	13.200

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.652
DRR006520	Root Summer glycyrrhizin high producing strain	18.769
DRR006521	Root Winter glycyrrhizin high producing strain	3.840
DRR006522	Root Winter glycyrrhizin high producing strain	3.574
DRR006523	Root Summer glycyrrhizin low producing strain	37.284
DRR006524	Root Summer glycyrrhizin low producing strain	37.182
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.895
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.923

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.629
SRR2868004	Drought Stress (root)	36.399
SRR2967015	Control (root)	30.126

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.818
SRR9715740	Leaf	3.919
SRR9715741	Leaf	2.738
SRR9715739	Root	5.549
SRR9715742	Root	19.744
SRR9715743	Root	18.336

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.891
SRR8749028	MeJA induced 9h	0.515
SRR8749029	MeJA induced 9h	0.516
SRR8749030	Uninduced	0.517
SRR8749031	Uninduced	0.257
SRR8749032	Uninduced	0.342

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.714
SRR8400027	Control - Root	24.025