Gene detail

Gene detail information of Glyur001691s00029476

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G03960.1	1.00E-73	Phosphotyrosine protein phosphatases superfamily protein
NR	XP_004507656.1	6.78E-122	PREDICTED: probable tyrosine-protein phosphatase At1g05000-like [Cicer arietinum]
COG	YP_826138.1	5.00E-11	hypothetical protein Acid_4894 [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q9ZVN4\|Y1500_ARATH	1.00E-91	Probable tyrosine-protein phosphatase At1g05000
trEMBL	tr\|G7JKG2\|G7JKG2_MEDTR	2.00E-119	Tyrosine specific protein phosphatase family protein {ECO:0000313\|EMBL:AES92689.1}

Sequence

Transcript Sequence

>Glyur001691s00029476.1
CACGTCCCCGTTTCCACTCATCCCACACAAGACTCGAAAGCATCTTACCGAAGATCCTCTACCCTACTCCTCTATTCCCCTATTGATTCCAAACCCTCTCTCTCTTCCTTTGTTCCTATATATTCCAAACTCACTGTGCTTCCTATTATTATATCTATCTATATCTATATCTATATCTATATCTATATATGTAATAACAATATAGATCATTAGATCCTGCAAACTGGAGATCCCTTGAATCGTTCCTCTGCATAACATTGCACCTTTCACTGTTCAGTGTTTTGGCGCCAAAACCATGAAGCTCGACAACTGCAACGGCCAGATGTCCCTCGCTGCCGACGCATCCCCGCCGCACAACGCCGACGAGATATTCGTGCCGCCGCTGAACTTCGCGATGGTCGACAATGGCATTTTTAGGTCCGGCTTTCCTGATTCTGCCAACTTCGGATTCCTGAAATCCCTTCGTCTCCGTTCCGTAATATGTTTGTGCCTTGAACCGTATCCAGAAGCGACTGCGGAGTTTCTGAAGGCCAACGGAATAAGGCTTTATCAATTCGGGATCGATGGCTGTAAGGAACCCTTTGTCAACATCCCAAATGATACGATTCGTGAAGCTTTGAAAGTAGCCCTTGATGTTAGGAACCACCCCGTGCTGATTCATTGTAAACGAGGGAAGCACCGAACTGGTTGTCTCGTGGGATGCATAAGAAGATTGCAGAGGTGGTGTCTATCCTCTGTTTTTGATGAGTACCAAAGGTTTGCTGGTGCCAAGGCCAGAGTGTCAGACCAGAGGTTCATCGAATTGTTTGATATTTCTAGTTTTAAGAACAACCCACTGGCATTTTCATGCTCAAGGAAATAGGAATTGAAATAATGGGGGCAATTTAGAAAGCTGCTGCTTCCTCCCATGGAGTATTTCCATGATGAAGTGAAGTATCATTACTAGTCTTTTTATATTCGTTCACTGAAAATTAGAGCAGGATGAGTGGGAATTGGAATAATGGGGGCAATTTAGAAAGCTGCTGCTTGGANACGTCTACTTTCCTTTCCTGTTTCAATGTTCGATGCCTAATCTCAGGCGCTGCTTCTGCGTTTATTTCCCTAGTCAGTTACTATGCCCCCATTGAGCTGGACTCAAGGTGGACCTGGTAAAAAATGTTCCACTTTGATATATTAATAAAATAATGATGGNTTGAGATTAAAGACAGACATGTTAACACAAGTAGCAAATACAGTTGTAATTTGCAATCATAGTCAGAAAGCTAAGCTAAAACATNTTTTCTATTTTCAAATAAATAGGAAATGAAAACAGAAATAAACCGGTGTTAAACAAGAACTTATTTTCATTTCCTGTGAGTTCTGAAACCAAATCCCCTCCCTTTCTANCCAATTTCTATAACTGCATTTTTGCTTAACTTTGCCATTTCTTTGTTTTGACTTTTCCATTTCTTTACTTGGCACATTGCAATTTAATTATTCATTGAAAATAACACTGGGGAAACCGAGGTCCGTTCAAGGGCCATGACAACTTCACCCAAGTACACAAATGTAAGCTCGTTATATAGTGCTTCAATGGTAAAAGCAGCAGTGAGTGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01691	12263	16402	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016311 dephosphorylation

molecular_function

GO:0004725 protein tyrosine phosphatase activity

GO:0016791 phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001691s00029476.1	PF03162.8	Y_phosphatase2	27	180	2.40E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.133
SRR1783600	control	6.223
SRR1783602	moderate drought stress	4.331
SRR1811619	moderate drought stress	4.485

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.849
DRR006520	Root Summer glycyrrhizin high producing strain	5.111
DRR006521	Root Winter glycyrrhizin high producing strain	21.808
DRR006522	Root Winter glycyrrhizin high producing strain	20.590
DRR006523	Root Summer glycyrrhizin low producing strain	4.621
DRR006524	Root Summer glycyrrhizin low producing strain	4.612
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.930
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.949

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.150
SRR2868004	Drought Stress (root)	32.692
SRR2967015	Control (root)	19.651

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.984
SRR9715740	Leaf	3.854
SRR9715741	Leaf	5.091
SRR9715739	Root	2.986
SRR9715742	Root	4.283
SRR9715743	Root	4.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.552
SRR8749028	MeJA induced 9h	10.257
SRR8749029	MeJA induced 9h	8.448
SRR8749030	Uninduced	13.375
SRR8749031	Uninduced	8.737
SRR8749032	Uninduced	7.866

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.695
SRR8400027	Control - Root	13.491