Gene detail information of Glyur001691s00029474 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05520.2 | 3.00E-171 | EPS15 homology domain 2 |
| NR | KHN28769.1 | 0 | EH domain-containing protein 1 [Glycine soja] |
| COG | YP_007468115.1 | 4.00E-18 | dynamin family protein [Desulfocapsa sulfexigens DSM 10523] |
| trEMBL | tr|I1MR19|I1MR19_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01691 | 761 | 5560 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001691s00029474.1 | PF00350.18 | Dynamin_N | 16 | 150 | 1.00E-10 |
| Glyur001691s00029474.2 | PF13499.1 | EF-hand_7 | 26 | 81 | 1.50E-07 |
| Glyur001691s00029474.2 | PF00350.18 | Dynamin_N | 201 | 361 | 3.90E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.153 |
| SRR1783600 | control | 5.079 |
| SRR1783602 | moderate drought stress | 4.458 |
| SRR1811619 | moderate drought stress | 4.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.831 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.896 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.106 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.104 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.279 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.293 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.487 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.748 |
| SRR2868004 | Drought Stress (root) | 14.356 |
| SRR2967015 | Control (root) | 13.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.139 |
| SRR9715740 | Leaf | 5.206 |
| SRR9715741 | Leaf | 5.652 |
| SRR9715739 | Root | 2.085 |
| SRR9715742 | Root | 6.393 |
| SRR9715743 | Root | 4.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.959 |
| SRR8749028 | MeJA induced 9h | 4.101 |
| SRR8749029 | MeJA induced 9h | 4.720 |
| SRR8749030 | Uninduced | 2.816 |
| SRR8749031 | Uninduced | 1.538 |
| SRR8749032 | Uninduced | 1.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.962 |
| SRR8400027 | Control - Root | 15.913 |