Gene detail information of Glyur001690s00034525 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04400.1 | 3.00E-33 | Ribosomal protein L14p/L23e family protein |
| NR | NP_001189805.1 | 1.00E-39 | 60S ribosomal protein L23 [Arabidopsis thaliana] |
| COG | YP_003483879.1 | 7.00E-22 | 50S ribosomal protein L14P [Aciduliprofundum boonei T469] |
| Swissprot | tr|P49690|RL23_ARATH | 6.00E-42 | 60S ribosomal protein L23 |
| trEMBL | tr|F4J3P1|F4J3P1_ARATH | 4.00E-40 | 60S ribosomal protein L23 {ECO:0000313|EMBL:AEE74077.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01690 | 25846 | 26064 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001690s00034525.1 | PF00238.14 | Ribosomal_L14 | 1 | 58 | 5.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 67.946 |
| SRR1783600 | control | 64.942 |
| SRR1783602 | moderate drought stress | 13.674 |
| SRR1811619 | moderate drought stress | 11.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 69.947 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.625 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.314 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.713 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.629 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.713 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.704 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.539 |
| SRR2868004 | Drought Stress (root) | 12.238 |
| SRR2967015 | Control (root) | 6.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.591 |
| SRR9715740 | Leaf | 0.641 |
| SRR9715741 | Leaf | 0.784 |
| SRR9715739 | Root | 2.727 |
| SRR9715742 | Root | 2.242 |
| SRR9715743 | Root | 2.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.479 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.139 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.327 |
| SRR8749032 | Uninduced | 0.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.091 |
| SRR8400027 | Control - Root | 1.229 |