Gene detail

Gene detail information of Glyur001685s00029135

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50590.1	4.00E-82	RmlC-like cupins superfamily protein
NR	KHN43861.1	1.53E-135	Pirin-like protein [Glycine soja]
COG	YP_006860828.1	2.00E-60	pirin domain-containing protein [Candidatus Nitrososphaera gargensis Ga9.2]
Swissprot	tr\|Q9LPS9\|PRNL1_ARATH	2.00E-101	Pirin-like protein At1g50590
trEMBL	tr\|I1M6K5\|I1M6K5_SOYBN	6.00E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G02060.1}

Sequence

Transcript Sequence

>Glyur001685s00029135.1
AACAGAACCAAAAGTTCCTTCGGTTCAAGCAATCCAATCCAATCCAACACAACACCACCTTCATTTTTAATTTGACCTTCCCAAAAGGAGAGAGAAGTTTGCAGTGATGATCATGTGAAAGAGCCTCGTCTTGTGGCCAGGAAATTCTTGGCCAGACCACAACATGAAGGGGTTGGTGCTGTTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGTACTTTGATCCCTTCCTTGTCTTGGATGAATTTTCAGTTACTGCTCCTGCTGGCTTTCCTGATCACCCTCATAGAGGCTTTGAGACGGTCACATACATGCTGCAGGGAGGTGTAACGCATGAAGATTTTGAAGGACATAAGGGAACAATAGAAGCTGGTGACTTGCAGTGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTCTGCCTCAAGGAACTCAAAAGGGTCTGCAGCTTTGGATCAACCTGCCTTCCAAATACAAAATGATTGAACCAAGGTACCAAGAAGTGTTGAGTAAGGACATAGTAGAAGTAGTGGAAGATGGCATCAAGGTTAGAGTTATAGCTGGGGAAGCTCTAGGGAAAAAGTCACCAATCCAAACAAGGACTCCAACCATGTACTTGGACTTCTATCTCAAGCCTGGTGCTCACTTACAACAACACATACCAAAATATTGGAATGCTTTTGTTTATGTCTTGGAAGGAGAGGGTGTGTTTGGAAACCTGAAATCTCACCCTGCAAACTCTCACCACATCCTTCTTCTTGGCACTAGTGGGGATGGCCTAGAGGCATGGAACAATTCTAATTCTGAGCTCCTTAGGTTCATTTTGGTTGGAGCTGAACCTCTGGGGGAGCCTGTTGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAAGAGATTGACCAAACCATTGATGATTTTGACAACTTTGCTAATGGATTTGAGAAAGCAAGGCATTGGAGAGCTGATGNAAGCGCAATTAGCCTTGATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01685	44029	47089	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001685s00029135.1	PF02678.11	Pirin	1	51	1.60E-18
Glyur001685s00029135.1	PF05726.8	Pirin_C	104	209	7.80E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.090
SRR1783600	control	0.037
SRR1783602	moderate drought stress	0.305
SRR1811619	moderate drought stress	0.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.570
DRR006520	Root Summer glycyrrhizin high producing strain	2.678
DRR006521	Root Winter glycyrrhizin high producing strain	0.110
DRR006522	Root Winter glycyrrhizin high producing strain	0.108
DRR006523	Root Summer glycyrrhizin low producing strain	1.812
DRR006524	Root Summer glycyrrhizin low producing strain	1.867
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.983
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.994

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.097
SRR2868004	Drought Stress (root)	12.542
SRR2967015	Control (root)	6.611

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.901
SRR9715740	Leaf	24.110
SRR9715741	Leaf	27.366
SRR9715739	Root	0.249
SRR9715742	Root	0.406
SRR9715743	Root	0.289

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.490
SRR8749028	MeJA induced 9h	0.763
SRR8749029	MeJA induced 9h	0.216
SRR8749030	Uninduced	12.767
SRR8749031	Uninduced	1.511
SRR8749032	Uninduced	1.563

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.756
SRR8400027	Control - Root	5.002