Gene detail

Gene detail information of Glyur001685s00029134.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55500.1	8.00E-174	beta-1,2-xylosyltransferase
NR	XP_004500132.1	0	PREDICTED: beta-(1,2)-xylosyltransferase-like [Cicer arietinum]
COG	YP_007118580.1	1.00E-06	hypothetical protein Osc7112_5970 [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q9LDH0\|XYLT_ARATH	0	Beta-(1,2)-xylosyltransferase
trEMBL	tr\|Q4VWQ6\|Q4VWQ6_MEDSA	0	Beta 1,2 xylosyltransferase {ECO:0000313\|EMBL:AAQ73546.1}

Sequence

Transcript Sequence

>Glyur001685s00029134.1
AAAGCATTTTACCTACTTGTTTCCACTGGTGCAAATCCTGTCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCCATGAACAGAAGGGTGAAGAACACCCTCCTCTTCCTCTTCGCCTTCAACTCCCTCTCTCTCTTCCTCTACTTCACCCACCACCACCACTCCTCCTCTCTCAACCCCAACAACACCAACCCTTCTTCCAAAAATCCAACCTTTCAACGACCCTTTGGAGACACCAACTTGACCCAATTCTCCTCAAAGCCATGGCCCATCTTACCCTCTTACCTCCCCTGGTCTCACACCTCCTCCTCCGTTCCCCTTCGCTCCTGCGAGGCCTATTTCGGCAACGGCTTCACGCGCCGCCTCGACCCACTCCCCTCACGCGCCGCCGGTGGAGCTGGGTGGTTCCGGTGCTGGCACAGCGAGACGCTGAGAAGCTCGGTGTGCGAGGGTGGAAGGGTTCGAATGGTTCCCGAGAGGATTCAGATGGCGAAGGGTGGTGAGTCATTGATGGAGGTTGTTGGTAGAGGGGAAGAGGAGGAGCTCCCTGTGTTCCAAAACGGTGCGTTTGAGGTTGATGGTGGTGAAGGGAGAGAGAGAAGAGAAGAGGAGGAGATGGTCGTTGACCGTGACTTTCTGGATCGGTATGTGCCTCGTGGTGAGGTCATGAGACACACCATGCGTGATTTAATCAGTAAGATTCGGATCGTTCCTCGGAAGGACTTTGCTTGTGATGAGTGGATTGAGGAACCAACACTTCTGGTGACACGCTTTGAGTATGCCAATCTTTTTCACACTGTTACAGACTGGTACAGTGCATATGTTTCTTCTAGAGTTACTGGCCTGCCTAATCGACCTCNTTTGGTCTTTGTAGATGGCCACTGTATGGCTCCACTCGAAGAGACATGGAAAGCGTTATTCTCAAGCCTCAGATATGCTAAAAACTTCAGTGGTACAGTTTGTTTTCGACATGCTATTCTCTCACCTTTGGGATATGAGACTGCACTGTTTAAAGGACTAACGGAAGATATATTTTGTGATGGAGCTTCTGCACAAGAACTGTGGCAAAACCCTGACAACCACAAAACTGCCCGCCTATCTGAGTTTGGAGAAATNATCAGAGCTGCATTTGGGCTACCATTAAACTTACACCATGTTGGAAAACCAGCCTCTGGACATAATGTCCTCTTTGTTCGTCGGGAAGATTACCTTGCTCATCCACGACATGGTGGTAAAGTCGAATCAAGACTAAGCAATGAACCAGAAGTCTTCGATGCCTTGAAGAGTTGGGCATCTAATTATAAAGGGTGTAAAATCAACCTCGTCAATGGATTGTTTGCGCACATGTCTATGAAGGAGCAGGTACGAGCCATTCAAGATGCATCGGTGATCATCGGTGCCCATGGTGCTGGTCTTACTCACATAGTATCTGCATTGCCCAAAACCGTGATTCTGGAGATCATTAGCAGCCAATTCAGACGCCCACATTTCGCATATATTGCCCGGTGGAAAGGGTTGGAGTATCATGCAATAAACCTTGATGGATCATATGCCAATCCTGGAACTGTGATCAACGAGCTGGTCAGCATAATGAAAAGCCTTGGATGTTGAGTGCTTTGGGTTTTTGACTTGAAACTGCTGATATCTGAGCTTTGAGTAGTGGAATGGAAAGTGATNTTTAATTTCCTTTTGCTCATATCTCCTCTGTGGCATGCAATCTTTTACCTTTTTACTACAGAGCCAGCGTGGTTACTGAATTGATAGAGTTGCTGATATCTTGTTGGAGCAGAAATAGCATAACTTTTTTCAAACTGAATTTAACTTGACGATTCTATGATGTGTCCATGTATGCAACTGAAGNGGGTTGCAGCAGAATCAGTGCCATGGGAGAAGAGTTCAATTTCTGCTGGTTTATATAGCTTGATGGCTTCTTGTGGCAGTTCAATTGGACTGTTGCTAGTACCTGGTGCAGTATATGGCATTTTGCTGCGCCATTTTGTTACCTTCATTTGCTCCATGTGCCCCCAGTAGTATACAGATGCGGGGGTCTCAAATTTTTGCTTTTGTACATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01685	39452	42827	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT61

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03714	XYLT	EC:2.4.2.38	Various types of N-glycan biosynthesis	map00513

Gene Ontology

molecular_function
GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001685s00029134.1	PF04577.9	DUF563	239	486	1.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.944
SRR1783600	control	31.255
SRR1783602	moderate drought stress	52.778
SRR1811619	moderate drought stress	52.385

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.688
DRR006520	Root Summer glycyrrhizin high producing strain	34.226
DRR006521	Root Winter glycyrrhizin high producing strain	41.325
DRR006522	Root Winter glycyrrhizin high producing strain	40.490
DRR006523	Root Summer glycyrrhizin low producing strain	30.735
DRR006524	Root Summer glycyrrhizin low producing strain	30.826
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.550
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.662

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.718
SRR2868004	Drought Stress (root)	60.719
SRR2967015	Control (root)	78.727

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.897
SRR9715740	Leaf	27.132
SRR9715741	Leaf	27.608
SRR9715739	Root	39.553
SRR9715742	Root	35.503
SRR9715743	Root	37.560

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.169
SRR8749028	MeJA induced 9h	39.919
SRR8749029	MeJA induced 9h	14.112
SRR8749030	Uninduced	26.869
SRR8749031	Uninduced	27.909
SRR8749032	Uninduced	23.831

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.454
SRR8400027	Control - Root	40.620