Gene detail information of Glyur001685s00029131 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04700.1 | 4.00E-51 | Ankyrin repeat family protein |
| NR | KHN28408.1 | 0 | Ankyrin repeat-containing protein [Glycine soja] |
| Swissprot | tr|Q9C7A2|Y3236_ARATH | 3.00E-12 | Ankyrin repeat-containing protein At3g12360 |
| trEMBL | tr|I1N0F2|I1N0F2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G09450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01685 | 33145 | 37022 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001685s00029131.1 | PF12796.2 | Ank_2 | 34 | 126 | 1.00E-07 |
| Glyur001685s00029131.1 | PF13962.1 | PGG | 462 | 573 | 3.00E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.642 |
| SRR1783600 | control | 2.649 |
| SRR1783602 | moderate drought stress | 2.216 |
| SRR1811619 | moderate drought stress | 2.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.280 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.638 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.569 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.498 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.804 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.513 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.071 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.206 |
| SRR2868004 | Drought Stress (root) | 4.314 |
| SRR2967015 | Control (root) | 5.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.761 |
| SRR9715740 | Leaf | 0.136 |
| SRR9715741 | Leaf | 0.401 |
| SRR9715739 | Root | 0.346 |
| SRR9715742 | Root | 2.857 |
| SRR9715743 | Root | 2.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.932 |
| SRR8749028 | MeJA induced 9h | 0.976 |
| SRR8749029 | MeJA induced 9h | 0.702 |
| SRR8749030 | Uninduced | 1.895 |
| SRR8749031 | Uninduced | 1.321 |
| SRR8749032 | Uninduced | 2.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.028 |
| SRR8400027 | Control - Root | 3.251 |