Gene detail

Gene detail information of Glyur001685s00029129

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50575.1	6.00E-94	Putative lysine decarboxylase family protein
NR	XP_003532159.1	8.92E-166	PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL5-like [Glycine max]
COG	YP_004445410.1	2.00E-16	hypothetical protein [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q84M85\|LOGL5_ORYSJ	7.00E-07	Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL5
trEMBL	tr\|I1KYF9\|I1KYF9_SOYBN	3.00E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G43700.1}

Sequence

Transcript Sequence

>Glyur001685s00029129.1
ATGGGATTCTCGGTTGCAGCTTCGTTGGGTTCCCATTCCCATATTGTGCTAAGAGGCACTCAGGAAACGAGAATCAACTGCCAATTCTTCTGCAGCAGAACAGAGCAGAATAGCGTTGGTTTCAAGTTCCCAAAGCATATTAAGGCCATTCATAGAGCAGCTTTTCTAAGCAAGCAAGAGTCAATTGAGTTGGATGACAGGAAGAGCCCAATTGAGGTTAAAGAAGAGATCAAACAATGTTATGAACTCATAAACAGATTAGGGAGAGGAACTGTGTATCTGGGATGGGCCCGGACCATTCACATTACGTGCAAGCACAAGGACTGGCTAAAGAGGCAAATAGCAAATCTTTTGAACTGCACTACATGGTCAGGGGCTGGACCAGGGCTAATGGATGCTGTGACTCAAGGTGCTCTTCTGGCAGGAAAACCAGTTGGTGGATTCAAGATAGGAAGAGAAGCTGGGGAATGGACAGTATCCAACTTCCATCCATACTTACCATCAGAAAATTACCTTACCTGCAGGTTTTTCTCTGCAAGGAAACACGGGCTGGTCGATTGTGTAGTGAGGAATAATTCTTCTGAAAAGACTGCTGTTGTTGCCCTTCCTGGTGGGGTTGGTACTCTGGATGAGGTGTTTGAGATACTGGCATTAATTCAGCTAGAACGGATTGGATCGAAGCTTCCCGTTCCTTTCCTGTTGATGAACTATGATTCATTCTATTCAAAGCTTCTTGACTTCTTAGATGTTTGTGAGGATTGGGGAACTGTCTCTAAAGGAGAGGTTGCACCATTGTGGAAGGTTTGTAACTCCAACTCGGAAGCTCTGACTTACCTGGCAGATTTCTACAGTATTTATTCAAGCGATGCAAGTAAGAATGTAACAAAATTACACAGTACACACGAATCACCATCGTGATGAAGATTGTTTTTTGGTTGGCGTTTGACATACGTTTCCTTCCTTAGCAGTTGTCAGTTGTGTTGTTGTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01685	26116	28929	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001685s00029129.1	PF03641.9	Lysine_decarbox	131	278	3.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.529
SRR1783600	control	0.650
SRR1783602	moderate drought stress	0.815
SRR1811619	moderate drought stress	0.768

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.698
DRR006520	Root Summer glycyrrhizin high producing strain	3.357
DRR006521	Root Winter glycyrrhizin high producing strain	2.106
DRR006522	Root Winter glycyrrhizin high producing strain	1.404
DRR006523	Root Summer glycyrrhizin low producing strain	0.808
DRR006524	Root Summer glycyrrhizin low producing strain	0.585
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.116
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.258

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.269
SRR2868004	Drought Stress (root)	7.455
SRR2967015	Control (root)	6.392

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.742
SRR9715740	Leaf	3.171
SRR9715741	Leaf	7.086
SRR9715739	Root	1.280
SRR9715742	Root	2.445
SRR9715743	Root	2.140

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.592
SRR8749028	MeJA induced 9h	2.497
SRR8749029	MeJA induced 9h	1.812
SRR8749030	Uninduced	1.728
SRR8749031	Uninduced	0.991
SRR8749032	Uninduced	1.544

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.293
SRR8400027	Control - Root	2.659