Gene detail information of Glyur001682s00037306 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59540.1 | 5.00E-45 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | KHN00303.1 | 1.03E-81 | 1-aminocyclopropane-1-carboxylate oxidase like 1 [Glycine soja] |
| Swissprot | tr|Q9LTH7|ACH12_ARATH | 2.00E-52 | 1-aminocyclopropane-1-carboxylate oxidase homolog 12 |
| trEMBL | tr|I1L7I9|I1L7I9_SOYBN | 9.00E-82 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G01030.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01682 | 46121 | 49040 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001682s00037306.1 | PF14226.1 | DIOX_N | 77 | 183 | 1.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.626 |
| SRR1783600 | control | 6.639 |
| SRR1783602 | moderate drought stress | 4.933 |
| SRR1811619 | moderate drought stress | 5.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.910 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.436 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.683 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.404 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.449 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.722 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.202 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.897 |
| SRR2868004 | Drought Stress (root) | 3.820 |
| SRR2967015 | Control (root) | 3.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.825 |
| SRR9715740 | Leaf | 3.619 |
| SRR9715741 | Leaf | 1.732 |
| SRR9715739 | Root | 1.304 |
| SRR9715742 | Root | 1.051 |
| SRR9715743 | Root | 1.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.838 |
| SRR8749028 | MeJA induced 9h | 2.946 |
| SRR8749029 | MeJA induced 9h | 1.016 |
| SRR8749030 | Uninduced | 4.070 |
| SRR8749031 | Uninduced | 0.012 |
| SRR8749032 | Uninduced | 0.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.921 |
| SRR8400027 | Control - Root | 4.574 |