Gene detail

Gene detail information of Glyur001681s00028853

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17800.2	4.00E-99	Arabidopsis RAC-like 1
NR	XP_007136003.1	2.31E-139	hypothetical protein PHAVU_009G009700g [Phaseolus vulgaris]
COG	YP_003319433.1	1.00E-11	small GTP-binding protein [Sphaerobacter thermophilus DSM 20745]
Swissprot	tr\|O04369\|RAC1_LOTJA	5.00E-139	Rac-like GTP-binding protein RAC1 (Precursor)
trEMBL	tr\|V7AQR1\|V7AQR1_PHAVU	9.00E-140	Uncharacterized protein {ECO:0000313\|EMBL:ESW07997.1}

Sequence

Transcript Sequence

>Glyur001681s00028853.1
CAGCAACATGAATTTGAGATAGCTGGCAAAAGCTTGTCTCCGGGTCAGTCACAGTCAGCCAAGTGTCTCAACTCTCAAAACTTTTTCTTTTATTTTTCTCTTCCTCTTTCCTTCTTCATTTTCTCTCTTTAAAATCTGATTGGGAAAATTCAATTCAATTTCCCCCATTTGCTCCTTCTACTTTTGTGTCTGCAACTGCAAACATTAACACCAAATAGGTTTCATACTACACTGAATTCTGGTTTCGGCGTTTCAAGTTAGAAAAAATAACAGATAACAGAAGAGGGGGAAAAGGGGCATTGTTGGTTTGGATAGATCTCTTCTCTCTGATCTGAAGAATGAGTGCGTCCAGGTTCATAAAGTGCGTCACCGTCGGTGATGGTGCCGTTGGCAAAACCTGCTTGTTGATTTCTTACACCAGCAACACATTTCCCACGGACTACGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTTGTTGTGGATGGAAGCACCGTAAACCTGGGATTATGGGATACTGCCGGTCAGGAGGATTATAATAGACTAAGGCCCTTGAGCTATCGAGGAGCTGATGTCTTTATACTTGCCTTTTCTCTTATAAGCAAGGCCAGCTATGAAAATATTGCAAAGAAGTGGATTCCTGAACTAAGGCATTATGCTCCTGGTGTTCCAATAATTCTAGTTGGAACAAAGTTAGATCTTCGGGATGATAAGCAATTTTTTTTAGACCACCCTGGTGCTGTACCAATTACTACAGCACAGGGAGAAGAATTGAGAAAGCTGATTGGGGCTCCTGCCTACATCGAGTGTAGTTCAAAGACACAGCAGAATGTGAAAGCTGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGGAAAACACAGAAGGCCTGCTCAATATTAATGAGTGCGTCCAGGTTCATAAAGTGCGTCACCGTGGGTGACGGTGCTGTCGGCAAAACCTGCTTGTTGATTTCTTACACCAGCAACACATTTCCCACGGAGGATTATAATAGACTAAGACCCTTGAGCTATAGAGGAGCTGATGTCTTTATACTTGCCTTTTCTCTTATAAGCAAGGCCAGCTATGAAAATATTGCAAAGAAGTGGATTCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTAGTTGGAACAAAATTAGATCTTCGGGAGGATAAGCAATTTTTTATGGATCACCCTGGTGCAGTGCCAATCACTACAGCCCAAGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCTGTCTACATAGAGTGTAGTTCAAAAACGCAGCAGAATGTGAAAGCTGTCTTCGATGCTGCCATCAAAGTGGTTCTTCAACCACCAAAGCAGAAGAAAAAGAAGAGGAAGACACAGAAAGCTTGCTCAATATTATGATTAAGAATCAGAAATTAATAGCAAGAAGTGACTGACCGGTCAACCTTTGGTGCTGCCTCTNCACCACTTTGTATTATTTCGTTCCCTGTCTTCTGTGGAAAGCCGGAAGCTGTGTATAGTTTGAANTGGCATTGTATTCGTAGGGTGTGGTCTCATTTCATACTATCTAAACTACAATTAGCTTAATTATATATTTATATATGCCTGGTGCCGCCTGTTTCCTTTTGTTATTATACGTAGCGGCCCACAAGAAATACTGCTTGCTTATATTAATGCGATCATATTCATGGCCTGTGCTTGTGGTGTCATCTTTGAAATTTGTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01681	24707	34874	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001681s00028853.1	PF00071.17	Ras	8	178	1.40E-50
Glyur001681s00028853.1	PF00071.17	Ras	205	230	9.70E-06
Glyur001681s00028853.1	PF00071.17	Ras	231	344	5.70E-23
Glyur001681s00028853.2	PF00071.17	Ras	8	178	3.70E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.079
SRR1783600	control	25.496
SRR1783602	moderate drought stress	14.635
SRR1811619	moderate drought stress	14.703

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.219
DRR006520	Root Summer glycyrrhizin high producing strain	24.065
DRR006521	Root Winter glycyrrhizin high producing strain	8.484
DRR006522	Root Winter glycyrrhizin high producing strain	9.317
DRR006523	Root Summer glycyrrhizin low producing strain	22.319
DRR006524	Root Summer glycyrrhizin low producing strain	21.645
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.982
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.112

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.660
SRR2868004	Drought Stress (root)	27.860
SRR2967015	Control (root)	27.523

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.478
SRR9715740	Leaf	7.967
SRR9715741	Leaf	8.431
SRR9715739	Root	19.064
SRR9715742	Root	16.495
SRR9715743	Root	16.273

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.967
SRR8749028	MeJA induced 9h	13.761
SRR8749029	MeJA induced 9h	16.203
SRR8749030	Uninduced	5.551
SRR8749031	Uninduced	2.367
SRR8749032	Uninduced	4.920

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.326
SRR8400027	Control - Root	41.939