Gene detail information of Glyur001680s00029822 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23600.1 | 8.00E-71 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_003550071.1 | 1.23E-105 | PREDICTED: endo-1,3;1,4-beta-D-glucanase [Glycine max] |
| COG | YP_007094597.1 | 4.00E-12 | Carboxymethylenebutenolidase [Chroococcidiopsis thermalis PCC 7203] |
| Swissprot | tr|Q9ZT66|E134_MAIZE | 4.00E-34 | Endo-1,3;1,4-beta-D-glucanase (Precursor) |
| trEMBL | tr|A0A072UQU5|A0A072UQU5_MEDTR | 1.00E-105 | Endo-1,3-1,4-beta-D-glucanase-like protein {ECO:0000313|EMBL:KEH32209.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01680 | 58325 | 61383 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001680s00029822.1 | PF01738.13 | DLH | 11 | 194 | 4.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.141 |
| SRR1783600 | control | 31.953 |
| SRR1783602 | moderate drought stress | 39.771 |
| SRR1811619 | moderate drought stress | 38.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 42.584 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.050 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.583 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.686 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.893 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.821 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 149.857 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 150.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 194.373 |
| SRR2868004 | Drought Stress (root) | 375.262 |
| SRR2967015 | Control (root) | 185.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 241.413 |
| SRR9715740 | Leaf | 455.189 |
| SRR9715741 | Leaf | 211.040 |
| SRR9715739 | Root | 41.835 |
| SRR9715742 | Root | 45.299 |
| SRR9715743 | Root | 46.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.529 |
| SRR8749028 | MeJA induced 9h | 31.225 |
| SRR8749029 | MeJA induced 9h | 62.930 |
| SRR8749030 | Uninduced | 43.205 |
| SRR8749031 | Uninduced | 20.959 |
| SRR8749032 | Uninduced | 33.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 113.983 |
| SRR8400027 | Control - Root | 104.427 |