Gene detail information of Glyur001680s00029815 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59850.1 | 6.00E-72 | Ribosomal protein S8 family protein |
| NR | KHN33076.1 | 4.23E-91 | 40S ribosomal protein S15a-1 [Glycine soja] |
| COG | YP_001541562.1 | 4.00E-41 | 30S ribosomal protein S8 [Caldivirga maquilingensis IC-167] |
| Swissprot | tr|P42798|R15A1_ARATH | 2.00E-91 | 40S ribosomal protein S15a-1 |
| trEMBL | tr|B9HM61|B9HM61_POPTR | 1.00E-90 | Wrp15a family protein {ECO:0000313|EMBL:EEE89441.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01680 | 30211 | 31546 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001680s00029815.1 | PF00410.14 | Ribosomal_S8 | 41 | 164 | 5.20E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 211.943 |
| SRR1783600 | control | 213.734 |
| SRR1783602 | moderate drought stress | 137.951 |
| SRR1811619 | moderate drought stress | 136.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 372.019 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 370.617 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 201.602 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 195.977 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 293.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 295.962 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 89.110 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 87.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 635.203 |
| SRR2868004 | Drought Stress (root) | 385.853 |
| SRR2967015 | Control (root) | 343.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 200.683 |
| SRR9715740 | Leaf | 178.423 |
| SRR9715741 | Leaf | 181.920 |
| SRR9715739 | Root | 418.657 |
| SRR9715742 | Root | 408.474 |
| SRR9715743 | Root | 404.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 946.160 |
| SRR8749028 | MeJA induced 9h | 477.380 |
| SRR8749029 | MeJA induced 9h | 754.461 |
| SRR8749030 | Uninduced | 155.865 |
| SRR8749031 | Uninduced | 108.880 |
| SRR8749032 | Uninduced | 199.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 328.448 |
| SRR8400027 | Control - Root | 284.030 |