Gene detail information of Glyur001679s00031671 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40400.2 | 0 | Protein of unknown function (DUF399 and DUF3411) |
| NR | XP_003601002.1 | 0 | Chloroplast lumen common protein family [Medicago truncatula] |
| COG | YP_004626550.1 | 7.00E-14 | hypothetical protein Thein_1728 [Thermodesulfatator indicus DSM 15286] |
| trEMBL | tr|G7J2E8|G7J2E8_MEDTR | 0 | DUF399 family protein {ECO:0000313|EMBL:AES71253.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01679 | 40739 | 46521 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001679s00031671.1 | PF04187.8 | DUF399 | 163 | 385 | 9.90E-37 |
| Glyur001679s00031671.1 | PF11891.3 | DUF3411 | 491 | 675 | 9.70E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.235 |
| SRR1783600 | control | 3.289 |
| SRR1783602 | moderate drought stress | 4.798 |
| SRR1811619 | moderate drought stress | 4.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.606 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.426 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.986 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.809 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.360 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.250 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.288 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.249 |
| SRR2868004 | Drought Stress (root) | 23.057 |
| SRR2967015 | Control (root) | 19.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 60.742 |
| SRR9715740 | Leaf | 106.484 |
| SRR9715741 | Leaf | 85.807 |
| SRR9715739 | Root | 0.530 |
| SRR9715742 | Root | 2.306 |
| SRR9715743 | Root | 2.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.654 |
| SRR8749028 | MeJA induced 9h | 12.902 |
| SRR8749029 | MeJA induced 9h | 8.715 |
| SRR8749030 | Uninduced | 18.409 |
| SRR8749031 | Uninduced | 50.774 |
| SRR8749032 | Uninduced | 27.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.803 |
| SRR8400027 | Control - Root | 8.371 |