Gene detail

Gene detail information of Glyur001676s00030624

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	2.00E-155	NB-ARC domain-containing disease resistance protein
NR	KEH33017.1	0	disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
COG	YP_001520699.1	7.00E-11	TPR domain-containing protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|A0A072UTR4\|A0A072UTR4_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:KEH33017.1}

Sequence

Transcript Sequence

>Glyur001676s00030624.1
ATGGCAATGGCAGATGTGGTTGCTGGGGCATTTCTTTCGCCTCTCTTTGATCAGATTTTTAAGAAGTTGGCTTCAGTTGATTTCACTGACTATTTCCGTAGAGGCAAACTTGACAAGCTGGTGGAAAATCTTGANAGTACACTCAGTTCTATCAACCAATTGCTGGATGACGCAGAGATACAGCAATACCAAAAGCTAGACGTGAAGAAGTGGCTTGGTGATGTTAAACATGCTATGTATGAGGCAGATCAATTGTTGGATGAGATTGATACTGATGCACCAGTGAAGAAGCTCAAAGTACTAGGATTCTTATCGGCTTTTACTAGTCCATTTGAATCCAGGANCAAAGAATTGCTAGAGAACCTAGGTTCTCTTGCAAAGCAAAAGGATAAGCTGGGATTGAAAGAAGGAACTAATGAATGCGGATTCTATTGGAAACCCTCAAAAAGATTTCCAACCACATCTTTGGTGGATGAATCTAGCATATATGGCAGAAAAGCTGACAAAAAGGAAGCAATCAATTTTTTACTTTCAGACAATGTCAGTGGCAGCAACCAGGTACCAGTAATCAGCATAGTGGGTCTTGGTGGGATGGGTAAGACCACCCTTGCTCAGCTTGTGTACAAGGACCTGGAAGAGCAATTTCAACTTAGAGCTTGGGTCCATGTTTCCGAATCTTTTGATGTTGTTGGACTTACCAAAGCAATTCTCAGGTCATTTAAGTCTTCAGCGGAAGATGGTGAAGACTTGAATCTCCTCCAAAATCAACTGCAGCAATTACTAATGGGCAAGAAATATTTGCTTGTTCTAGACGATGTCTNNAANAGGAATNGGGAANGNTGGGAACTGTTACTACTTCCCTTNAACCATGGATCTTCTGGGAGTAAGATTGTTGTGACAACACGTGACAAGNAGGTAGCATCAATCATGAAATCCACCCAACTGCTTATTTTAAAGCAATTGGAGGAGACCNATTGCTGGAGTTTATTTGTGAGACATGCATTTCATGGTAGGAATGTCAGTGAACATCCAAATCTTGAACCAACTGGCAAAAGAATTGTAGGCAAGTGTGGAGGGTTGCCTCTAGCCGTAAAAACATTGGGGAATCTCTTGCGAAGAAATTTCTCTCAACACGAATGGGAGAAGATATTGGATACTGACATGTGGCGTTTATCAGAGATTGACAACAATGTTAACCCGGTGTTGAGANTGAGTTACCATAATCTTCCTTCCGATCTGAAGCGCTGTTTTGCCTTTTGTTCCATATTCCCCAGAGGTTATGAGTTTGACAAACATGAATTAATCAAGCTTTGGATGGCAGAAGGTNTGCTGAAGTGCAGAACAGACAAAAGTGAAGAAGAGTTGGGTAATGAATTCTTCAATGATCTAGAGTCGATTTCATTTTTCCAAGTCCAACCACCAGCATGGAGATGGGATGACCACGAGGGCTTTGTCATGCATGACCTTGTCAGTGATTTAGCGAAATCAGTGTCAGAAGAATTTTGTTTAGAAATAAAAGGTGATAGGGTGCAAGGTATCCCTGAAAGGACACGTCACATTCAGTGGTCTCTTGAATTAGATGATGGTGATAAAATATTGGAGCATGTTTACAAGATTAAGGGATTACGGAGTTTGATGGTACTACAAGATCTAGTTAATTGGTTCGTGCTAAGCGACAATGTACAACGTGATATGTTTTCAAGACTAAAATATTTGCGGATGTTATCATTCCGCAGGTGTTATCTTTCAAATCTAGCTGATGAGATAAAAGATTTAAAGCTGTTGCGTTATCTAGACCTTTCTCTCACTGAGATTACAAGCTTACCTGATTCCATTTGTTTGTTGTATAATCTGCAGACACTGATATTGAATCGTTGTCAATTGACTGAGCTCCCTTCGGATTTTTACAAACTTGTCAACTTACGCCATCTTGAGCTCGAAGGCATTTGTATATTAAAGAAGATGCCAAAGGATATAGGAAGTCTAATCCATCTTCAGACGCTGACTATGTTTGTTGTGGGAGAGCGCAGCGGGTCTGATATTAAGGAGTTGGCGAAACTCAACCAGCTTCAAGGAAGCTTTCGTATTGTAGGGTTGGAAAATGTTATTGATGCTGCAGATGCTACGGAAGCGAATTTGAAAGATAAGAAACATCTGGAAAAATTAAACATGATGTACAGTGCGGGTGGAGAGAACAATGGCGGCTTAATAACTCAAAGGGATGTCTTGGAGGCTCTTCAACCAAATAGCAACCTGAATACCCTCACCATCGAAAACTACCGAGGCACTAGCTTTCCAAATTGGCTTGGGGNTTGTCCTTGTTTACCCAATTTAGTATATCTTACTCTGGGGGGATGTGAATTCTGTTCGCAGTTGCCATCACTTGGGCAGCTCCCCTCTCTCNAGTGGCTTCGTATTTCAAGTTGTCACGGAATAGAGATCATTGGTGCAGAGTTCTACGGCAATAATTCATCAAATGTTCCATTCAGGTCCCTTGAATATTTGGAATTTAAGGGAATGCCCAATTGGAAGGAATGGATATGTTTCGAAGGTCTCCCTTCGCTTAAAAATCTTGTTATAACAGACTGTCCCAAGTTAAAAGGGGTNCTTCCTCAACACCTTCCTTCTTTGCAAGCATTGAAGATTATTGATTGCCAAGAGTTGGAGGCTTCAATTCCCAAGTCTGCTGATCTCAGAAGGCTAAGTCTGGTGCGATGCAAAAACATTATGGTAAATGAATCCGCATCCAACTTGACATGGGCCCGTCTTAGTGGAACTTGTGTGATTGGGTCCTGCCTGGAGCAATCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01676	55317	58127	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001676s00030624.1	PF00931.17	NB-ARC	167	445	4.10E-72
Glyur001676s00030624.1	PF13855.1	LRR_8	595	648	2.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.195
SRR1783600	control	6.188
SRR1783602	moderate drought stress	7.613
SRR1811619	moderate drought stress	7.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.046
DRR006520	Root Summer glycyrrhizin high producing strain	5.061
DRR006521	Root Winter glycyrrhizin high producing strain	3.178
DRR006522	Root Winter glycyrrhizin high producing strain	2.987
DRR006523	Root Summer glycyrrhizin low producing strain	0.431
DRR006524	Root Summer glycyrrhizin low producing strain	1.177
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.159
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.221

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.159
SRR2868004	Drought Stress (root)	4.450
SRR2967015	Control (root)	4.249

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.429
SRR9715740	Leaf	9.671
SRR9715741	Leaf	13.277
SRR9715739	Root	3.597
SRR9715742	Root	17.217
SRR9715743	Root	13.524

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.164
SRR8749028	MeJA induced 9h	4.108
SRR8749029	MeJA induced 9h	1.027
SRR8749030	Uninduced	1.004
SRR8749031	Uninduced	0.702
SRR8749032	Uninduced	0.658

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.321
SRR8400027	Control - Root	23.104