Gene detail information of Glyur001676s00030619 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41430.5 | 4.00E-25 | dehydration-induced protein (ERD15) |
| NR | AFK35335.1 | 6.08E-84 | unknown [Lotus japonicus] |
| Swissprot | tr|Q39096|ERD15_ARATH | 3.00E-30 | Protein EARLY RESPONSIVE TO DEHYDRATION 15 |
| trEMBL | tr|I3S4Z3|I3S4Z3_LOTJA | 2.00E-84 | Uncharacterized protein {ECO:0000313|EMBL:AFK35335.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01676 | 30811 | 33235 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001676s00030619.1 | PF07145.10 | PAM2 | 7 | 21 | 0.00023 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.925 |
| SRR1783600 | control | 38.162 |
| SRR1783602 | moderate drought stress | 71.419 |
| SRR1811619 | moderate drought stress | 70.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 211.180 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 207.295 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 59.614 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 57.580 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 144.351 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 143.339 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.453 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 77.087 |
| SRR2868004 | Drought Stress (root) | 111.809 |
| SRR2967015 | Control (root) | 250.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.407 |
| SRR9715740 | Leaf | 32.465 |
| SRR9715741 | Leaf | 46.132 |
| SRR9715739 | Root | 28.548 |
| SRR9715742 | Root | 56.419 |
| SRR9715743 | Root | 49.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 83.107 |
| SRR8749028 | MeJA induced 9h | 146.927 |
| SRR8749029 | MeJA induced 9h | 67.182 |
| SRR8749030 | Uninduced | 38.223 |
| SRR8749031 | Uninduced | 7.189 |
| SRR8749032 | Uninduced | 17.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 84.578 |
| SRR8400027 | Control - Root | 88.467 |