Gene detail information of Glyur001676s00030617.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08550.1 | 0 | elongation defective 1 protein / ELD1 protein |
| NR | XP_003598900.1 | 0 | SDL-1 protein [Medicago truncatula] |
| Swissprot | tr|Q9C9Z9|ELD1_ARATH | 0 | Glycosyltransferase-like KOBITO 1 {ECO:0000303|PubMed:12215501, ECO:0000303|PubMed:22457425} (Precursor) |
| trEMBL | tr|G7J1N7|G7J1N7_MEDTR | 0 | Elongation defective 1 protein/ELD1 protein {ECO:0000313|EMBL:AES69151.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01676 | 19762 | 26399 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001676s00030617.2 | PF13704.1 | Glyco_tranf_2_4 | 58 | 178 | 2.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.411 |
| SRR1783600 | control | 40.605 |
| SRR1783602 | moderate drought stress | 35.725 |
| SRR1811619 | moderate drought stress | 34.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.144 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.246 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.984 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.374 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.393 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.115 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.435 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.418 |
| SRR2868004 | Drought Stress (root) | 29.854 |
| SRR2967015 | Control (root) | 30.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.659 |
| SRR9715740 | Leaf | 18.973 |
| SRR9715741 | Leaf | 17.297 |
| SRR9715739 | Root | 14.034 |
| SRR9715742 | Root | 24.999 |
| SRR9715743 | Root | 23.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.886 |
| SRR8749028 | MeJA induced 9h | 29.361 |
| SRR8749029 | MeJA induced 9h | 15.461 |
| SRR8749030 | Uninduced | 6.411 |
| SRR8749031 | Uninduced | 5.973 |
| SRR8749032 | Uninduced | 4.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 47.762 |
| SRR8400027 | Control - Root | 41.447 |