Gene detail

Gene detail information of Glyur001676s00030616

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	8.00E-151	NB-ARC domain-containing disease resistance protein
NR	KEH17686.1	0	LRR and NB-ARC domain disease resistance protein [Medicago truncatula]
COG	YP_001660791.1	3.00E-17	apoptotic protease-activating factor 1 like [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|A0A072TKE9\|A0A072TKE9_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:KEH17686.1}

Sequence

Transcript Sequence

>Glyur001676s00030616.1
GAGATGGCTGCAACTTTGGTGGGAGGGGCTTTTCTCTCTGCAACTGTTCAAACCTTAGTCGAGAAACTGGCCTCAACAGAGTTTCGTGATTTCATCAGAAGCAGAAAGCTAAATGAGTCACTATTGGCAGAGATGGAAACAACAATGCTCACTCTTCAGGCACTGCTGGATGATGCTGAGCAGAAGCAGATCGTCAACACTACAGTCAAAGACTGGGTAGATCGGCTGAAAGACGCAGTCTTTGATGCTGAGGATTTGCTCAATCAAATCAGTTACGATTCTCTGCGATGCAAGTTGGAGAGTAAACATGCTGAAAACTTCACTAATCAGGTTTGGAGCTTCCTTCCTTCTCCTTTTAAAAACTCCTATGGAGAGATCAATTCCCAAATGAAGTTTATGTGTCAAAAGCTGCAACACTTTGTCCAACAGAGAGACAACCTTGGCTTGCAAACTGCAAGTGGGAAGATTTCTCGTCGAATGCCTACAAGTTCAATGGTAGATCAATCTGTTATGGTTGGTAGGAGGGATGATAAAGAGAGACTCATGAATATGTTGTTGTCAGACAGTGGCAACAACAACAATAATATAGGTGTTGTTGCANTTTGGGGCATGGGAGGTGTTGGAAAAACGACCCTTGCTCAACTTCTTTACAACGATAAAGAAGTTCAAGAACATTTTGATATGAAAGCATGGGCTTGCGTGTCAGAGGATTTTGATATTCTGAGAGTGACCAAAACTCTTCTTGAATCTGTCACTTCAAGAGCTTGGGAAACCAATAATCTTGATTTTCTTCNAGTTGAATTAAATCAAAACTTGAGGGACAAAAGATTTTTGTTTGTGTTGGATGATTTATGGAATGACAATTATAATGATTGGCATGAGTTAGTAACTCCCTTTATCGATGGAAAATCTGGATGCAGGGTGATAATCACAACACGCCAACAAAGAGTTGCAGAGGTAGCACACACATTTCCTATTCATAAATTAGAACCTCTGTCCCACGAAGACTGTTGGTCTTTACTCTCCAAGCATGCATTTGGAAGTGAAGATTTTGGCAGNAATAAATNNCCAAACCTTGAAGAAATTGGTAGGAAGATTGCAAGCAAGTGTGGCGGGTTGCCAATAGCTGCAAAAACACTCGGGGGACTTCTACGCTCAAAGAAGGCTTTCTTGAACATTCTCAAGGGAAAAAAAACATTGGAGGAAGTTGGTGAGGACTACTTTGTTGAGTTAATATCGAGATCCTTAATTCAACAATCAAATGATGATTATAGAGGAGAAAGGTTTGTTATGCATGACCTCGTCAATGATTTAGCCACGGTCGTATCTGGAAAAAGTTGTTGTAGGCTTGGATGTGGTGACATCTCTGAATATGTTCGCTATTTGTCATATAACCAAGAAAAATATGACATTTTCAAGAAATTTGAGATTTTCTTCGATTTCAAAGGCTTGCGAAGTTTCCTACCCATTGGCCATTGGTGGCAACAATGTTACTTATCTAGAAAGGTGGTTGATGATTTGCTACCCACACTCGGAAGGTTGCGTGTGTTATCATTATCAAATTATGAAAACATCACCATGCTACCGGATTCAGTTGGCAGTTTGGTGCAGTTGCGGTATCTAGATGTCTCCCACACTGGAATCAAAAGCTTACCTGATACAACATGTAACCTTTACAATTTGCAAACCTTGAATTTATCAAAATGTGGGGGTCTCACTGAATTGCCGGTTCATATCGAAAAGTTAATTGAGTTACGTCACCTTGATATAAGTGGGACAAACATAAAGGAGATGCCGAGGCAAATTGTTGCACTAGAAAACCTTCAAACACTATCTGTTTTTGTAGTGGGCAAGCATGAAGTTGGTTTGAGTGTGAGAGAGCTCGGGAAGTTTCCTAACCTACGGGGAAAACTATGCATCCAGAACCTGCATAATGTCGTTGAAGCTGTTGAGGCGTGTGATGCCAACTTGAAGAGCAAAGAACACATCAAGGAGTTAGAGCTATATTGGGGTGAACAAACTGAAGACTCTCGAATTGAAAAAGATGTGCTTGGTATGTTGCAACCGTCAGTAAACCTGAAGGAATTGTCGATCCACCTCTTTGGAGGGACAAGCTTTCCGAGTTGGTTGGGAGATTCTTCGTTTTCTAACCTGGTGGACCTTTGCCTTAGAAATTGTGAATATTGTGTGACACTCCCACCACTTGGGCAGCTACCTTCTCTCAAGGACCTAGTGATTGATGGTATGAAGATGTTGGAGACAATTGGGGCAGAGTTCTATGGCATGGAAGGAGGAGGTTCCAATTCTCCATTCCAACCATTTCCATCCCTAGAGAATCTGGGATTTGAGAAGATGCCAAGTTGGACGGAATGGCTTCCCTTTGAAGGCAGCAAATCTCCTTTTCCTCATCTTAAAACTCTCAGGTTAAGGAAGTGTCCTGAACTGAGGGGACATTTGCCCGGCCATATATCTTCCATGGAACGAATTGAAATAAGTGGTTGTGGCCATCTCTTGGAAACACCACCTACTCTGCATTGGCTTTCATCGATAAAACGTTTAGATATTGAGGGAGATTTAGATTCTCAAGGGAAACACCACCTACTCTGCTGTGACACGCTGTTGTCTCTGCCAAAAATGATTATTAGCAGCACTTGTCTTCGAGACTTGTATCTCTCTAAGATTCCGTCTCTCACTGCATTTCGAGCTGATGGCCTACCCACTTCGTTAAAGACACTTGATATTGATGACTGTGAGAATTTAGCATTCCTGCCTCCTGAAACGTGGAGCAACTACACGTCGCTTGTGACTTTGGGTTTATTGAATAGCTGTGATGCACTTACCTCCTTCCCACTGGATGGTTTCCCTGTGCTCCAAGGTCTTTCCATTTTTCGTTGTAGGAGTCTGAAATCCATTTCTATTTCAGAAAGTCGTTCCCTTCGCCCTTCAACCCTCCAATCACTTNNGGTCNNTTCCTGTNAGGCACTCAAATCAGTGCCTCNACGGATGGACACCCTCACCGCTCTTGAACGGTTGACTCTCTTGAATGTTCCAGAACTAGAGTTGTCATTTTGTGAAGGAGCTTGGCTGCCTCCCAAATTACGGTCAATTGATATTGACTCTGTGAGAATAGCAACGCCTGTAAGTGGATGGGGTCTCCAACGCCTCACTGCTCTTTCATCTTTGACTATTAGAGGTGATGATATTGTTAGCACCTTGCTGAAGGAGCGGNTGCTGCCCATTTCCCTAGTGTCTCTGATAATCGGGGGTCTCTCTGAAATGAAATCCTTACCTGTAAATGGGCTACGACACCTCTCCTATCTGGAAACACTTGAATTTGAACATTGTTCAGGGCTTGAGTCCTTGCCAGAAGACATGTTGCCTTCCTCTCTAAAAACACTTCGATTTAGGGATTGTCCAAGACTTGAGTCATTTCCGGAACACTGGTTCCCTTCCTCTCTTAAGCTACTCAAGATTGTCGGATGCCCTCTGTTAGAAGCAAGTGACGATAATATGAGCCATGTGAAGGGAAGGGAAGGGAAGGGAAGGAAGAATTGCAATCCCGTTGCAGAATTCTCAACCCCAAAGCCAAAAATCAATCTCTGGNGTGACACGCTATTGTCTCTGCCAAAAATGATTATTAGCAGCACTTGTCTTCGAGACTTATATCTCTCTAAGATTCCGTCTCTCACTGCATTTCCAGCTGATGGCCTACCCACTTCGTTAAAGACACTTGATATTGATGACTGTGAGAATTTAGCATTCCTGCCTCCTGAAACGTGGAGCAGCTACACATCGCTTGTGACTTTGGGTTTATTGAATAGCTGTGATGCACTTACCTCCTTCCCACTGGATGGTTTCCCTGCACTCCAACGTCTTTCCATTTTTCGTTGTAGGAGTCTGGAATCCATTTCTATTTCGGAAAGTCCTTCCCATCGCCCGTCAACCCTCCAATCACTTGTGGTCCATTCCTGTGACGCACTCAAATCAGTACCTCGACGGATGGACACCCTCACCGCTCTTGAACGGTTGTCTCTCTGCGATGTTCCAGAACTAGAGTTGTCATTTTGTGAAGGAGCTTGGCTGCCTCCCAAATTACGGTCAATTGAGATTGGATCCATGAGAATAGCAACGCATCACCTTGCTGAAGGAGCGGATGCTGCCCATTTCCCTAGTGACGATAATATGAGCCATGTGAAGGGAAGGGAAGGGAAGGGAAGGAAGAATTGCAATCCCGTTGCAGGGATGTCAATGGTAAGGCCTGCAAAGTGCATACACAGATGTGTCGAAGAAGGAAGGCGTTATATCAAATGGAAATGTTTTCGTATGGTTTTTGGAGATGAAGTTGAAACCACTGGCAACTAAACTCGTGCACTGGTTGGTAGCAGCTAATTCTTTAGCTATTTCAGTCCAGTTTATGTATGCTCAAACCATATGCTGAACAATGTTCCAAGAAAATTTTAGCTTCTGAATTTGTTTGTTTCTCTACAGTTTCAGATTTCTTTTAAGAATTTCTTAAGCTATATTATTGTTNATTGAGTAATTGTGAGATGGATTACCATTATGTGTGGAGTGTTTTCATATTTTTAGTCAGACGAATGCTCTATAGCTTTGTGTAACACCTTCATATTATGGTGAAATGTATAATACTACTGAGTTTGCTGGTTTTGTT

Protein Sequence

>Glyur001676s00030616.1
EMAATLVGGAFLSATVQTLVEKLASTEFRDFIRSRKLNESLLAEMETTMLTLQALLDDAEQKQIVNTTVKDWVDRLKDAVFDAEDLLNQISYDSLRCKLESKHAENFTNQVWSFLPSPFKNSYGEINSQMKFMCQKLQHFVQQRDNLGLQTASGKISRRMPTSSMVDQSVMVGRRDDKERLMNMLLSDSGNNNNNIGVVAXWGMGGVGKTTLAQLLYNDKEVQEHFDMKAWACVSEDFDILRVTKTLLESVTSRAWETNNLDFLXVELNQNLRDKRFLFVLDDLWNDNYNDWHELVTPFIDGKSGCRVIITTRQQRVAEVAHTFPIHKLEPLSHEDCWSLLSKHAFGSEDFGXNKXPNLEEIGRKIASKCGGLPIAAKTLGGLLRSKKAFLNILKGKKTLEEVGEDYFVELISRSLIQQSNDDYRGERFVMHDLVNDLATVVSGKSCCRLGCGDISEYVRYLSYNQEKYDIFKKFEIFFDFKGLRSFLPIGHWWQQCYLSRKVVDDLLPTLGRLRVLSLSNYENITMLPDSVGSLVQLRYLDVSHTGIKSLPDTTCNLYNLQTLNLSKCGGLTELPVHIEKLIELRHLDISGTNIKEMPRQIVALENLQTLSVFVVGKHEVGLSVRELGKFPNLRGKLCIQNLHNVVEAVEACDANLKSKEHIKELELYWGEQTEDSRIEKDVLGMLQPSVNLKELSIHLFGGTSFPSWLGDSSFSNLVDLCLRNCEYCVTLPPLGQLPSLKDLVIDGMKMLETIGAEFYGMEGGGSNSPFQPFPSLENLGFEKMPSWTEWLPFEGSKSPFPHLKTLRLRKCPELRGHLPGHISSMERIEISGCGHLLETPPTLHWLSSIKRLDIEGDLDSQGKHHLLCCDTLLSLPKMIISSTCLRDLYLSKIPSLTAFRADGLPTSLKTLDIDDCENLAFLPPETWSNYTSLVTLGLLNSCDALTSFPLDGFPVLQGLSIFRCRSLKSISISESRSLRPSTLQSLXVXSCXALKSVPXRMDTLTALERLTLLNVPELELSFCEGAWLPPKLRSIDIDSVRIATPVSGWGLQRLTALSSLTIRGDDIVSTLLKERXLPISLVSLIIGGLSEMKSLPVNGLRHLSYLETLEFEHCSGLESLPEDMLPSSLKTLRFRDCPRLESFPEHWFPSSLKLLKIVGCPLLEASDDNMSHVKGREGKGRKNCNPVAEFSTPKPKINLWXDTLLSLPKMIISSTCLRDLYLSKIPSLTAFPADGLPTSLKTLDIDDCENLAFLPPETWSSYTSLVTLGLLNSCDALTSFPLDGFPALQRLSIFRCRSLESISISESPSHRPSTLQSLVVHSCDALKSVPRRMDTLTALERLSLCDVPELELSFCEGAWLPPKLRSIEIGSMRIATHHLAEGADAAHFPSDDNMSHVKGREGKGRKNCNPVAGMSMVRPAKCIHRCVEEGRRYIKWKCFRMVFGDEVETTGN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01676	10169	16355	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001676s00030616.1	PF00931.17	NB-ARC	175	389	8.30E-58
Glyur001676s00030616.1	PF12799.2	LRR_4	560	599	6.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.949
SRR1783600	control	4.065
SRR1783602	moderate drought stress	7.211
SRR1811619	moderate drought stress	7.069

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.433
DRR006520	Root Summer glycyrrhizin high producing strain	4.066
DRR006521	Root Winter glycyrrhizin high producing strain	2.974
DRR006522	Root Winter glycyrrhizin high producing strain	3.008
DRR006523	Root Summer glycyrrhizin low producing strain	4.203
DRR006524	Root Summer glycyrrhizin low producing strain	4.142
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.776
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.957

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.306
SRR2868004	Drought Stress (root)	7.233
SRR2967015	Control (root)	8.701

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.239
SRR9715740	Leaf	1.607
SRR9715741	Leaf	1.709
SRR9715739	Root	0.813
SRR9715742	Root	3.669
SRR9715743	Root	3.157

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.096
SRR8749028	MeJA induced 9h	2.342
SRR8749029	MeJA induced 9h	1.867
SRR8749030	Uninduced	0.847
SRR8749031	Uninduced	0.294
SRR8749032	Uninduced	0.268

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.107
SRR8400027	Control - Root	4.622