Gene detail

Gene detail information of Glyur001672s00031248

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58370.1	0	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
NR	XP_006601252.1	0	PREDICTED: uncharacterized protein LOC100818319 isoform X2 [Glycine max]
COG	YP_001869707.1	4.00E-65	glycoside hydrolase family protein [Nostoc punctiforme PCC 73102]
trEMBL	tr\|K7MNJ0\|K7MNJ0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G35060.2}

Sequence

Transcript Sequence

>Glyur001672s00031248.1
GCAGTGTTTTACATTCCGGATACCAACACCACTGTCATAGTACGATGATTTTTTTTTTTTTTACAGCCGCATCACACCAGTTTTTTTTATTTTCCAATGTATCTTATGCACAACTGCAGAGACTAATCCCTTCGAGGATCTAGAGCGCACTTAAAGGGCTATTTCTCAGAATGGTGAATTTTCGTACACACCGCAGTACACCACTTTGCAATGGAACCAGCCAGTGGTTCTTTTTGTTGGACCAGACCACAGACAGACAGAAAACACACTATATAGGACTTTTGGGGTTTGTTGCAGTAGTTTGACTCTTAGCCAGGGTTTTCAATTCCATTTGGCATACGTAGGAAATTGGAAGTGTAGTTTATAGTTATATACNCGTACGGATGGAAAAATCATCTGCACCTAACACTGCAAAATCTTGCAATCCAAGTCTAACACAATTGGATCTGATGTTCTTCGTATTTTTTAATGTTAAATTAAGGAACCAAAGCATCATTTCCTTAACCTCTGATCCTTACTTTAGGCTTCCATTCCAATTCAAGCATTACTAATCTCATCTGCAAGGCAAAGCAAAAAAGCACAGAGACAAGAGAAGGGAGGAGAAAAAAATTAAAAATTTCCTTTTATTTGATTTGATCCCAAAGCTTGGATAATGATNTATCCAAATTGTAGAATGAGTTGGAAGGAAAATTTATGGTTGGCACCCACTAGTTTTCCGTAGCCTTCACTTGCAAATTTGCTAAGTGAGTGGGTATATAAATGAAGAGGTTCTCTGCTTGCTGCTTCACAAGTAGTGTCTCCAAGTTTCACTCCCATTGGAAGCACAACCAATCTCAGTCTCAGATAATGGCAGGAAACATCTCTGGTCCAAGTGGGAGCATGGCTACTAATATTTTGCTTAATCATGACTTCTCTGGTGGGCTGAACTCTTGGCATCTCAATTGCTGCAATGGCTATGTAGTTTCAGCTGANGCAGGTGGTCAAGGAGGAATTTCCATGGAGTCGGATGGTAATTATGCTGTCATCACCGACCGNAAGGAATGCTGGCAAGGTCTTGAGCAAGATATNACAGACAGAGTTTTCATTGGTTCCACTTACATGGTTTCAGCTTGTGTTGGAGTATCAGGGCTTTCTCAGGGATCTGCTGATGTTAAGGCTACTCTAAAACTAGAATATCGCGATTCAGCTACTCAGTACTTGTTCATTGGGAGAACTTCTGTTATAANGGGTAGCTGGGAAAAGCTGGAAGGGACATTTTCATTGTCTACTATGCCTGATCGGGTTATATTTTATTTGGAAGGACCTGCTCCTGGAGTCAACCTGCTTATACGATCAGTAGAGATCAACTGTTCAAATCCAAATAAGAATGCCACAAGCACAGATGGATGTGTGTNTGCTGGAGATGACAACATCATAATAAACCCCCAATTTGAGGATGGCCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTGTGCTGCATGACTCCATGGCAGATGGGAAAATTGTTCCNAAGTCTGGGAAATTCTTTGCATCCGCAACAGAACGCACGCAAACCTGGAATGGAATTCAGCAGGACATAACTGGACGTGTAAATCGCAAGCTGGNCTATGAGATCACCGCTTTAGTTCGAATATTTGGCAACAATGTCACCAATGCTGATGTACGGGCTACTTTGTGGGTCCAAGCACCGGATCTCCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGATAAAGATTGGGTGACAATGCAGGGAAAATTCCTTCTAAATGGTTCCCCATCAAAAGTGGTCCTTTATTTAGAGGGCCCCCCTCCAGGCACTGACATTCTTGTCAATACTTTGGTCGTAAAGCATGCAGCTAAAACACCCCCTTCAACGCCACCAGATGTAAAGAATGTTGCTTTTGGGGTTAATATAATTGAGAACAGCAATCTGGCTGATGGCACCAAAGGATGGTTTCCCCTTGGTGATTGCACTCTAAGCGTTAAAACTGGTTCACCTCATATAATTCCACCAATGGCAAGAGATTCCCTTGGGCCTCATGAAGTCCTAAGCGGGCGCTACATCCTTGTAACTAATAGAAAACAAACATGGATGGGTCCTGCTCAGGTTATCACTGAGAAATTGAAACTCTTTTTGACTTATCAAGTATCTGCTTGGGTCCGGATTNGTTCGGGTTCAACCGGGCCACAGAATGTGAATGTTGCNCTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACCGAGGTTGCGGACGACAGATGGCACGAAATTGGTGGGTCCTTTAGAATTGAAAAGCAGCCATCAAAGGTTATGGTCTATATCCAAGGTCCTGCTTCTGGTGTGGACTTAATGGTTGCTGGACTTCAAATTTTTGCTGTTGATAGACATGCAAGATTTAGATATTTGAAGATGCAGACAGACAAGATCCGGAAGCGTGATGTTATCCTGAAATTCTCTGGGCTAGAGTCTAGCAGCTACCTTAACACCACAGTGCAAGTTAGACAAACACAGAACGATTTCCCTATTGGATCATGCATCAGCAGAACAAACATTGACAACGAAGATTTTGTTAACTTTTTTGTGAAAAATTTCAACTGGGCTGTGTTTGGAAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAAATTAAACTACAAGGATGCTGATGATCTGTTGAGCTTGTGTGAGAAGCACAAGATAGAAACCCGCGGACACTGCATCTTCTGGGAAGTGGATGGAGTTGTTCAGCAATGGGTTAAGTCACTGAATAAAAACGACTTGATGACTGCTGTCCAAAACCGCTTAACCGGCCTTCTGACTCGGTACAAGGGCAANTTCAGTCACTATGATGTTAACAATGAGATGCTGCATGGTTCATTTTACCAAGATAGGCTAGGTAAGGATATAAGGGCAAACATGTTCAAGACTGCAAACCAGCTTGATCCATCTGCNACACTGTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACAAGATCATGTCCAGACAAATACATTCAACACATTCTTGATTTGCAAGAGCAAGGTGCCCCGGTCGGTGGAATCGGAGTTCAAGGCCACATAGATAGTCCAGTGGGGCCTATTGTTTGTTCTTCCTTTGATAAACTCGGTATCCTTGGTCTACCTATATGGTTTACTGAGCTTGATGTGTCTTCTACCAATGAATATGTCAGAGCAGATGATCTTGAAGTTATGCTGAGGGAAGCTTTGGCTCACCCTGCTGTGGAAGGCATAATGCTGTGGGGATTTTGGGAGTTGTTTATGAGCAGGGACAATGCACACTTGGTGAATGCTGAAGGTGACATGAATGAAGCTGGGAAAAGGTTCCTAGCTCTAAAAAAAGAGTGGCTGTCTCATGGTCGTGGTCATGTTGATGAGCAAGGTCAATTCAACTTCAGAGGCTTTCATGGATCATATAATGTGGAAGTTGTGACCCCATCAAAGAAAATTTCCAAGACATTTGTGCTTGATAAAGGTGACTCCCCACTTGTGGTATCCATTGATTTATAAGCATCCTGTGTCACCTAAGAAGTGTCATACTTTTATCCTTAAACACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01672	51702	57696	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM22,CBM22,CBM22,GH10

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016798 hydrolase activity, acting on glycosyl bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001672s00031248.1	PF02018.12	CBM_4_9	44	184	2.60E-20
Glyur001672s00031248.1	PF02018.12	CBM_4_9	217	354	1.80E-20
Glyur001672s00031248.1	PF02018.12	CBM_4_9	388	531	2.80E-19
Glyur001672s00031248.1	PF00331.15	Glyco_hydro_10	587	866	3.00E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.358
SRR1783600	control	5.411
SRR1783602	moderate drought stress	10.725
SRR1811619	moderate drought stress	10.728

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.277
DRR006520	Root Summer glycyrrhizin high producing strain	21.022
DRR006521	Root Winter glycyrrhizin high producing strain	1.690
DRR006522	Root Winter glycyrrhizin high producing strain	1.721
DRR006523	Root Summer glycyrrhizin low producing strain	27.590
DRR006524	Root Summer glycyrrhizin low producing strain	27.519
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.657
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.722

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.675
SRR2868004	Drought Stress (root)	20.880
SRR2967015	Control (root)	21.705

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.999
SRR9715740	Leaf	7.933
SRR9715741	Leaf	4.216
SRR9715739	Root	8.001
SRR9715742	Root	36.689
SRR9715743	Root	31.675

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.740
SRR8749028	MeJA induced 9h	3.407
SRR8749029	MeJA induced 9h	1.234
SRR8749030	Uninduced	3.569
SRR8749031	Uninduced	2.084
SRR8749032	Uninduced	1.711

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.077
SRR8400027	Control - Root	29.906