Gene detail

Gene detail information of Glyur001671s00039464

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70300.1	0	K+ uptake permease 6
NR	KDO82513.1	0	hypothetical protein CISIN_1g004007mg [Citrus sinensis]
COG	YP_003225261.1	8.00E-61	K potassium transporter [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Swissprot	tr\|Q6YWQ4\|HAK25_ORYSJ	0	Potassium transporter 25
trEMBL	tr\|A0A067GS11\|A0A067GS11_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO82513.1}

Sequence

Transcript Sequence

>Glyur001671s00039464.1
ATGGATCTGGAAGGTGGAACTCGTCGAAACTCTAGCAAGAAGGAATCGTGGAAAACAGTTCTGACTCTAGCATATCAGAGCCTTGGAGTAGTGTATGGAGATTTGAGCATTTCACCGTTATACGTGTTCAGGAGCACTTTCGCTGAGGATATTGGTCACACANAGTCCAACGAAGAGATTTACGGTGTTTTGTCTTTGGTGTTCTGGGCAGTGACACTGATCCCTTTGGTTAAATACGTGTTCATAGTNCTCAAAGCTGATGATAATGGAGAAGGAGGCACGTTTGCTNTGTACTCTCTGCTGTGTCGACACGCCCGAGTTAACTCAATTCCCAATTGCCAGGTGGCAGATGAGGAACTCTCTGAGTANAAGAAAGATCCTTGTGGTGTGGCTTCGGGTACTAGCTTTTCCTCTAGGCTTAAGTCTACACTTGAGAAGCACAAGGTTCTGCAGAGGATTTTGTTGATCCTTGCTTTGGTTGGAACTTGCATGGTCATTGTTTTCTCAGCCGTGTCAGGATTAGAGCTTTCAATGTCCAAGGAGCATCACCCGTATGTAGAAGTTCCAGCTGCATGCATCATATTGATATGCTTGTTTGCGCTTCAACATTATGGCACACATAGGATTGCTTTCACTTCTGTGGTGTATCCATCTTTAATTCTTGCATATATGGGGCAAGCAGCTTATCTATCGAGACATCATCAAGTTGAGCACNTGTCTCACTTCGGGTTTTATGTATCTGTCCCAGAGAAATTGAGATGGCCCGTTCTGGTGATAGCCNTACTTGCCGCAGTTGTCGGAAGCCAAGCCATAATAAGCGGAACGTTCTCAATTATCAAGCAATGCTCTGCATTGAATTGCTTCCCNAGAGTTAAAGTGGTTCACACATCATCCAAAATTCATGGGCAAATATATATCCCTGAGATCAATTGGCTGTTGATGGTCTTGTGTTTGGCTGTAACTATTGGCTTCAGAGACACAAAGCGTCTCGGTAACGCCTCAGGTTTGGCAGTTATCACAGTGATGCTGGTCACCACCTGCTTGATGTCACTGGTTATTGTACTATGCTGGCATCAGAATGTTCTCCTCGCNCTTGGTTTTGTTTTTATATTTGGCACCGTTGAGGCTTTCTTCTTCTCTGCTTCTCTTGTCAAGTTCCTACAAGGAGCATGGGTGCCCATTGTATTGGCATTTGTATTTATGACTGTCATGTATGTTTGGCACTACGGCACACTCAAAAAGTACGAATTCGATGTTCAAAACAAGGTTTCCATCAACTGGCTACTCGGCATAGGCCCCAGCATAGGTATTGTACGAGTGCGTGGGGTTGGCCTTATTCATACCGACCTAGTTTCCGGAATTCCTGTAATCTTCTCCCACTTTGTGACCAACCTGCCGGCCTTCCATCAAGTCCTAGTCTTTCTCTGCATCAAACACGTGGCAATCCCGCATGTTAGACCTGAGGAACGGTTCCTAGTCGGCCGCGTAGGGCCAAGAGATTTCAGACTCTACCGGTGCATAGTGCGGTATGGATACCGCGATGTCCACAAGGATGATATNGAGTTTGAGAACGATCTCTTATGCAGCATAGCCGAGTTCATACAAAGCACCNGATTCTCTTCGAATGACGAGCTTGAAAAGGATGACAAAATGGCAGTTGTTGGTGCATGTTCTACCAATTCCATTTTGATGAGTGAGGATAATGTGGATAATGTTGATAACGCAGACTCGGGGGAGACTTCGGAGCTTAAGGAGATAAAGTCACCAAAGTTGATTCAACAACCGAAGAAAAAGGTGAGGTTTTNGGTACCAGAGAGCCCAAAGATTGACCCAAGTGCAAGGGAAGAGTTGGAGGAGGTGATGGAAGCCAGGGAAGCTGGCATAGCTTACATTATAGGACAATCATACATGAGAGCAAAACCAGGGTCTAGCACTGTGAAGAAAATAGCTATTAATTGTGTGTATGAATTCCTAAGGAGGAATAGCAGGGAACCCACCTTTGTAATTGGTGTACCTCATGCATCATCTTTGGAAGTTGGGATGATGTACCAAGTTTAATTTTTTTTTTTTTTGGCTTTTTTATAGAGGATAGAGCTTATCATGTACATATTGTTATGTTATATAGATAGTCAAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01671	40590	45288	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0071805 potassium ion transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015079 potassium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001671s00039464.1	PF02705.11	K_trans	208	514	2.80E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.570
SRR1783600	control	9.198
SRR1783602	moderate drought stress	7.060
SRR1811619	moderate drought stress	7.230

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.554
DRR006520	Root Summer glycyrrhizin high producing strain	2.295
DRR006521	Root Winter glycyrrhizin high producing strain	1.348
DRR006522	Root Winter glycyrrhizin high producing strain	1.401
DRR006523	Root Summer glycyrrhizin low producing strain	5.041
DRR006524	Root Summer glycyrrhizin low producing strain	5.231
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.393
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.184

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.572
SRR2868004	Drought Stress (root)	25.213
SRR2967015	Control (root)	15.777

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.987
SRR9715740	Leaf	2.938
SRR9715741	Leaf	4.981
SRR9715739	Root	5.152
SRR9715742	Root	10.138
SRR9715743	Root	9.344

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.774
SRR8749028	MeJA induced 9h	4.645
SRR8749029	MeJA induced 9h	5.718
SRR8749030	Uninduced	13.577
SRR8749031	Uninduced	9.789
SRR8749032	Uninduced	7.482

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.821
SRR8400027	Control - Root	27.062