Gene detail information of Glyur001671s00039461 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09490.1 | 1.00E-09 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | XP_007227248.1 | 1.15E-19 | hypothetical protein PRUPE_ppa018001mg [Prunus persica] |
| trEMBL | tr|M5XQU3|M5XQU3_PRUPE | 4.00E-20 | Uncharacterized protein {ECO:0000313|EMBL:EMJ28447.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01671 | 3790 | 8477 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001671s00039461.1 | PF13456.1 | RVT_3 | 228 | 312 | 1.50E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.938 |
| SRR1783600 | control | 8.558 |
| SRR1783602 | moderate drought stress | 7.930 |
| SRR1811619 | moderate drought stress | 7.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.600 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.619 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.919 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.952 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.939 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.317 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.742 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.762 |
| SRR2868004 | Drought Stress (root) | 13.233 |
| SRR2967015 | Control (root) | 12.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.293 |
| SRR9715740 | Leaf | 3.770 |
| SRR9715741 | Leaf | 4.701 |
| SRR9715739 | Root | 1.108 |
| SRR9715742 | Root | 3.132 |
| SRR9715743 | Root | 3.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.041 |
| SRR8749028 | MeJA induced 9h | 1.282 |
| SRR8749029 | MeJA induced 9h | 1.419 |
| SRR8749030 | Uninduced | 0.625 |
| SRR8749031 | Uninduced | 0.201 |
| SRR8749032 | Uninduced | 0.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.972 |
| SRR8400027 | Control - Root | 10.955 |