Gene detail information of Glyur001670s00039742 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004297985.1 | 1.34E-19 | PREDICTED: uncharacterized protein LOC101309247 [Fragaria vesca subsp. vesca] |
| trEMBL | tr|A0A078FXB9|A0A078FXB9_BRANA | 4.00E-17 | BnaC08g04330D protein {ECO:0000313|EMBL:CDY17819.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01670 | 48872 | 54250 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.509 |
| SRR1783600 | control | 0.537 |
| SRR1783602 | moderate drought stress | 0.410 |
| SRR1811619 | moderate drought stress | 0.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.423 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.210 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.865 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.101 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.200 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.121 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.059 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.724 |
| SRR2868004 | Drought Stress (root) | 4.124 |
| SRR2967015 | Control (root) | 2.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.074 |
| SRR9715740 | Leaf | 0.686 |
| SRR9715741 | Leaf | 0.262 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.094 |
| SRR9715743 | Root | 0.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.198 |
| SRR8400027 | Control - Root | 0.060 |