Gene detail

Gene detail information of Glyur001670s00039740

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37900.1	2.00E-127	Major facilitator superfamily protein
NR	KEH28963.1	0	peptide/nitrate transporter plant [Medicago truncatula]
COG	YP_002494545.1	2.00E-14	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|P0CI03\|PTR28_ARATH	7.00E-156	Protein NRT1/ PTR FAMILY 5.6
trEMBL	tr\|A0A072UIQ6\|A0A072UIQ6_MEDTR	0	Peptide/nitrate transporter plant {ECO:0000313\|EMBL:KEH28963.1}

Sequence

Transcript Sequence

>Glyur001670s00039740.1
AATGCAATAGCCACATCTAGCTCTCCAATATCTCTTTTAGAATACTTATTCTATTCTAAGAAGGATAGTATTCTATACTTCTAGCTATAGTACACTAATTACTCAGCCAGCATTGGAAGATGGAGAAGAACAAACTCGAAGCAAGACCCGGGAAGGTTAATGATGAGATAAAATGGGTTCATGATTCTTCATTGGATCATAAAGGAAGAGTTCCTCTCCGAGCTTCAACTGGTTCTTGGAAAGCTTCTCTCTTCATTATCGTGATTGAGTTTAGTGAGAGGCTGAGCTACTTTGGAATAGCAACTAGCTTGGTCATTTATCTNACAAAGGTTATGCACCAAGACCTTAAGACAGCAGTTAGGAATGTGAACTATTGGTCTGGTGTCACCACTTTGATGCCACTGTTTGGAGGATTCCTAGCTGATGCATACTTGGGTCGCTACACCACTGTGATCGCATCATGCATTGTTTATCTCATGGGTTTGGTTCTCCTTTCTTTGTCATGGTTTTTACCAAGCTTAAAGCCATGTGAGCACACTAATATGTGCATTGAACCAAGGAGGATCCATGAAGTGGTCTTTTTCCTAGCCATCTATTTAATATCCGTGGGAACTGGAGGGCACAAACCTTCCTTGGAGAGTTTTGGAGCTGATCAATTTGATGATGATCATGTTGAAGAAAGAAGACAAAAGATGTCATTCTTCAATTGGTGGAACTGTGGTCTTTGCAGTGGACTCGTTTTGGGAGTGACATTGATTGTTTATGTGCAAGACCATGTTAACTGGGGTGTTGCTGATATCATCCTCACAGGGGTCATGGCTTTCTCGTTGCTCATTTTTGTGATAGGAAGCTCATTTTATCGTTATAGGACACCAAATGGGAGCCCCTTGACTCCAATGTTGCAGGTTCTTGTTGCTGCAATTTCCAAAAGAAAGCTTCCCTATCCTTCCAATCCTACTCAATTGTATGAAGTTCCCAAGTCCGAGGACAACAATAGAAGATTTTTGCTTCACACCAATAAACTCAAGTAAGTGTCACAATAAGGTTTTAAATTGCANTTNCATTTGCGGCTATGTTTTACAGCTCTTGAAATTTGCAAAGCATTAGTAAAAAAAAATGTGACATATGCGACCGCAATTATAGTCAAAATCAGGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01670	28446	33586	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001670s00039740.1	PF00854.16	PTR2	108	291	7.40E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.935
SRR1783600	control	0.907
SRR1783602	moderate drought stress	0.628
SRR1811619	moderate drought stress	0.630

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.283
DRR006520	Root Summer glycyrrhizin high producing strain	1.026
DRR006521	Root Winter glycyrrhizin high producing strain	0.095
DRR006522	Root Winter glycyrrhizin high producing strain	0.093
DRR006523	Root Summer glycyrrhizin low producing strain	0.094
DRR006524	Root Summer glycyrrhizin low producing strain	0.095
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.983
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.987

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.059
SRR2868004	Drought Stress (root)	16.066
SRR2967015	Control (root)	30.231

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.147
SRR9715740	Leaf	8.788
SRR9715741	Leaf	6.336
SRR9715739	Root	11.573
SRR9715742	Root	36.226
SRR9715743	Root	32.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.802
SRR8400027	Control - Root	4.711