Gene detail

Gene detail information of Glyur001669s00041498

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19220.1	2.00E-93	auxin response factor 19
NR	XP_003533798.1	0	PREDICTED: auxin response factor 19-like [Glycine max]
Swissprot	tr\|Q8RYC8\|ARFS_ARATH	1.00E-117	Auxin response factor 19
trEMBL	tr\|I1L1T2\|I1L1T2_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur001669s00041498.1
CATCTATTGACNACTGGTTGGAGTGTCTTTGTCAGCACAAAAAGGCTTTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTCTCGGTATTAAGCGAGCCAATAGACAGCAGCCAGCGCTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGTCCATTTACTATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCCCTATACACCCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCCGGAGTACGCAGATATATGGGCACAATCACTGGGATCAGTGACTTGGATCCAGTCCGGTGGAAGAATTCGCAGTGGCGCAATCTCCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCGGTNGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAACCAGGAATGCCAGAAGATGAGTCTGACATAGAAAATGCTTTCAAGAGAGCTATGCCATGGCTTGGAGATGACCACCTTGGCATGAAGGATTCATCAAGTTCAATCTTTCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGCAGAACAATCAGTTCTCTTCCGCGCAATCCGGGTTTTTACCTCCATCTGTGCTTTCGTCTAATAATACACTGCATGGTAACCTTAACACCGATGATCCATCCAAGATATTGAGCTTTCAACAAGCCCCTGTCCTCTCTTCACCAAATCTTCAATTTAACAAACCTAATTTACCAAACCAAGTCAATCACTTGCAACAACAGTCACCAACCTCGTGGCCGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGAAGCTTCAGTCATTGTTGCAAACGCCGTTAAACCAGCTCCAGCAGCAACAGCAGCATCTGCCTGGATCGCAAAACATGCCACAGCCACAGCAACAGCAAGTGCAGCCCCAACTAACTCAACAGAAAGCACAACAGCCACAACAACAACACCAGCAGCAGCAGCAGCAGCAGCCATGTCAAAATACCATTATGAATAATGGGGCAGTTGCTTCTAACCAGATTCCAAATCAGTGTGTACAGCAACAAGCAACCTACTCTCAGCTTCAACAACAGCAACAGCAATTACTCTCAGGAAGTATCCCACCTCAACAAAATTTCCAATCGGTTGGTAAGAATGCATTGCTAATGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTAGTCTCTTACAGAGACAGCAGCAGCAACAGACTCAGTCGCNACAATTGCAACAAAGCCTGTTACAAAGGGCACAACAACAGCCACATATGACTCAGATGCCACAGCAAAACAACTCAGAGCAACAACCACATTTACAGTTGCTACAGAAGTTGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAACATGTTTCCACATCTAGCCCACTTTTGCAGTCACAGTTTCCGCAGCAACAAAATACTCATCAACAAAACCAGCAACTTCAGCAGCTGCCTCTATCGCAGCATCAGCCTCAACAGCTCGGCAACAACACATTCTCAATGGAGAAGCTTCTGAACAACAACAACGGCTTCTCTTCTTCAGCTCTAATGCAATCACAGCAGCTNCCTGTGAACCAACCCCAGAATACACAGAAACCACTGACTAATACTAGAGCTCCCTCTGCTCATACAGATGGTGATNCCCCGTCATGCTCAACTTCGCCGTCTACTAATAACTGCCAGATATCTCCTTCGAACCTAATGAAAAGAAACCAACCAGTCACATTAAGGGGGTCTTCAGTTGTTGAAACCACCAATAATCTGATGCAGGAGCTTCATAGTAAGTCTGACATGCANATCAAACATGAATTGCACGGCATAAAAGGACCTCATGATAAGCAAAAGTATAAAGGGGCAATCACTGATCAGATGGAAGCTTCTTCTGGAACATCNTATTGTATTGATCCTGGCAATATCCACCACCAGAACTTCCCACTTTCCAACTTCTGCATGGATGGGGATGTCCACTCACAACAACCTAGAAATAACCTGCCTACATTTGCCTCTAATCTTGATGGATTAACACCTGATACTTTGCTCTCAAGGGGGTATGATTCTCAGAAAGATCTTCAGAACTTNTTGTCTAATTATGGTGGTGGTGCTCCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTACTTCACAGTCATTTGGGGTGCCAAACATGCCTTTTAAACCAGGATGCTCAAGTGATATTGCCATCACTGATACTGGGGTTTTGANTAATGCCTTGTGGACTAATCAGACTCAACGAATGAGAACATATACTAAGAGCATAAAGATATTGTCATCTGCTGAGGTAACACAAATGAGCTTGGATGGGGACTTGGGTGGTCAATGTCATGTTCCAATCCCCAATCAAGCTTGTAGTGGGACAGAAAGTGGCAATGCATGGAGAGCACAGTATGATGATAACTCTGCAGCCTCATTTAACCGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01669	39427	44402	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001669s00041498.1	PF06507.8	Auxin_resp	9	91	1.70E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.524
SRR1783600	control	19.614
SRR1783602	moderate drought stress	20.158
SRR1811619	moderate drought stress	19.603

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.762
DRR006520	Root Summer glycyrrhizin high producing strain	23.007
DRR006521	Root Winter glycyrrhizin high producing strain	5.962
DRR006522	Root Winter glycyrrhizin high producing strain	6.014
DRR006523	Root Summer glycyrrhizin low producing strain	16.683
DRR006524	Root Summer glycyrrhizin low producing strain	16.314
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.621
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.745

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.725
SRR2868004	Drought Stress (root)	12.795
SRR2967015	Control (root)	14.183

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.635
SRR9715740	Leaf	2.698
SRR9715741	Leaf	2.792
SRR9715739	Root	1.717
SRR9715742	Root	7.763
SRR9715743	Root	6.391

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.048
SRR8749028	MeJA induced 9h	52.616
SRR8749029	MeJA induced 9h	22.220
SRR8749030	Uninduced	11.408
SRR8749031	Uninduced	9.862
SRR8749032	Uninduced	4.413

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.743
SRR8400027	Control - Root	12.127