Gene detail

Gene detail information of Glyur001667s00038414.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21410.1	5.00E-130	F-box/RNI-like superfamily protein
NR	KHN44273.1	0	F-box protein SKP2B [Glycine soja]
COG	YP_008562.1	1.00E-06	hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q9LPL4\|SKP2A_ARATH	3.00E-174	F-box protein SKP2A
trEMBL	tr\|I1KAH6\|I1KAH6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G12640.4}

Sequence

Transcript Sequence

>Glyur001667s00038414.1
GCTCTTACCTCCATTTCTCATCAAAGTAGAGTACTACACTTTACTTGGGACCCACTTAAGCGGTCATTTCTCAATCCATCACGCATACACGTGGCACGGTAACGTCTTCTCCTCTCTTTCTCTTTCTTTCCTTTCCTTCCTTCCTTTTCCTTCCTTCCCTGTTTTCAACCCTCTCTTNACCCCTATTTAGACCTTCTCCTCACACCTCCAATTTCAGAGAAGCACAACCAGTCTTCTCTGCTAGGAAGAAAAAAAAAAACAAAGAGGGCAATTTTGTTGGCTTTGTTGTTCCTCTTCTATACAGTGCTGGGAAAGTTGGTGCTTTTTTTGTTGGGGGTTGAGAAACTGAGATGGTTGGCAAGGATAATCTGAGGACAGAGGACTTGAATCTGTGCTTTGAGAAGCTCATGATGGTGGTTGCTTCTGCTGGGAACACTNGGAAAGGAGGGAACAACATGAAGGAGTGGAAGGATATTCCTGTGGAGCTTTTGATGCAAATTCTGTCCCTTGTTGATGATCAGACTGTGATCACAGCTTCTGGTGTTTGTCGTGGCTGGAGAGATGCAATTTACTNTGGCCTTGCCCGTTTATCACTCTCATGGTGTAACAAGAACATGAATGACTTGGTCCTATCTCTTGTTCCTAAGTTCACAAAATTGCAAACACTAATCCTTCGTCAAGATAAGCCTCAACTAGAGGATAATGCTGTTGAGACTATTGCAAATTGCTGCCATGACCTGCAGATCCTAGACCTCAGCAAGAGTTTCAAGCTTACCGATCGGTCATTGTATGCTATAGCCCATGGTTGTCGCGATCTTACAAAACTAAACATAAGTGGGTGTTCAGCATTTAGTGACACTGCTCTGGCTTACCTTGCCAGCTTCTGCAGAAAACTCAAAGTTCTAAATCTCTGTGGATGTGTTAGAGCAGCAACTGATACTGCATTGCAGGCTATTGGACACTGCTGCAATCAGTTGCAGTCTTTGAACCTTGGATGGTGTGATAAAGTTGGAGATGCTGGAGTGATGAGTTTAGCATATGGGTGTCCTGATCTAAGAACAGTTGACTTGTGTGGCTGTGTCCATATAACAGACAGGGCAATGTATTCCTTGGCACAAAGCAAAGTGAACAACAGGATGTGGGGATCATCTGTGAAAGGAGGAAGAGGAGACGACGACGACGAAGGGCTAAGGACTCTGAACATTAGCCAATGCACCGCACTCACTCCTTCTGCGGTTCAGGCGGTGTGTGACTCGTTCCCTTCCCTCCACACTTGCTCAGGGAGGCACTCACTCATCATGAGTGGCTGCCTCAACTTGACCTCTGTGCATTGCGCCTGTGCTGTCCATGCACACCGTGCATTCACCAATTTCCCTCATCCNGCTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01667	58109	61844	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001667s00038414.1	PF12937.2	F-box-like	40	73	2.40E-07
Glyur001667s00038414.1	PF13516.1	LRR_6	153	176	1.3
Glyur001667s00038414.1	PF13516.1	LRR_6	206	229	0.0016

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	80.240
SRR1783600	control	78.421
SRR1783602	moderate drought stress	226.099
SRR1811619	moderate drought stress	223.468

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	142.056
DRR006520	Root Summer glycyrrhizin high producing strain	141.393
DRR006521	Root Winter glycyrrhizin high producing strain	95.656
DRR006522	Root Winter glycyrrhizin high producing strain	94.601
DRR006523	Root Summer glycyrrhizin low producing strain	70.128
DRR006524	Root Summer glycyrrhizin low producing strain	69.474
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.612
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.862

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.618
SRR2868004	Drought Stress (root)	45.477
SRR2967015	Control (root)	58.060

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.455
SRR9715740	Leaf	12.317
SRR9715741	Leaf	17.306
SRR9715739	Root	111.187
SRR9715742	Root	77.983
SRR9715743	Root	89.670

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.901
SRR8749028	MeJA induced 9h	107.105
SRR8749029	MeJA induced 9h	99.854
SRR8749030	Uninduced	26.919
SRR8749031	Uninduced	79.735
SRR8749032	Uninduced	108.220

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.476
SRR8400027	Control - Root	32.149