Gene detail

Gene detail information of Glyur001666s00042238

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24030.1	0	SLAC1 homologue 3
NR	KEH25754.1	0	C4-dicarboxylate transporter/malic acid transporter [Medicago truncatula]
COG	YP_742114.1	9.00E-28	C4-dicarboxylate transporter/malic acid transport protein [Alkalilimnicola ehrlichii MLHE-1]
Swissprot	tr\|Q9FLV9\|SLAH3_ARATH	0	S-type anion channel SLAH3
trEMBL	tr\|A0A072U7M1\|A0A072U7M1_MEDTR	0	C4-dicarboxylate transporter/malic acid transporter {ECO:0000313\|EMBL:KEH25754.1}

Sequence

Transcript Sequence

>Glyur001666s00042238.1
GTGTAGCATGGAAAACAACAACATAACCATTGAAATTGTAGAACAAGGATCTCCAGAAGTTCCACCACTAATCAAGTATATATCNTCAAAAGAAGGAACTGAAGCAACCACACCAGAAACTTCACCAGGAAACCAACCTGATGAACCTTTAGTCACCAATCAACATCAAAGGAAGCATTCTGTTTCCATAAGCATGCCACTCACTTCNGAAGAAGTCCAACTTCAACCACTGAACAACAACAACAACAAAAAGGTTTTCTTCAGTGGAGAAAACATTGTCCACAAATATGGTGCCTCTGTTGAGCCAGGAACAACAACTGCTGCAGCTTCTTCTAAGCCTCCACTACAATCAAAATGTTATTCTCAACCTCTAAATGATGATGGTCCACAAGNGTCTTACCACCCTGGCATCAAAATGTTTAGGGATAAGAGGTTTGACTCATTCAAAACATGGTCTGGTGGGTTAGAGAGACAGCTGTCAATCCTACGTGGAAAGACACCTGGAGGAACTTCACAAGATGGAAACAACTCCAGGAGCATGGAGAGGCCACCTGTTGATAGGTATTTTGATGCATTGGAAGGTCCAGAGTTAGAAACTCTTAGGAGTTCAGAAGAGATAGTGCTTCCACATGACAAGCAATGGCCATTCCTTCTTAGGTTCCCAGTCTCATCATTTGGTATTTGCCTTGGAGTTACAAGCCAAGCAATTCTTTGGAAAACACTAGCCACATCCCCTGCCACTAAGTTCCTTCACATAAGCCTCAAAGTAAATCTAATCCTATGGTACATCTCCATTGCACTTGTTGCTTCTGTTTNCACAACCTACCTCCTCAAAATCCTCCTCTACTTCGAAGCGGTTCGCCGCGAGTACTACCACCCGATCCGTGTCAACTTCTTCTTTGCACCATGGATAGCTCTCTTGTTCTTAGCCCTTGGTGTTCCACCATCAGTTACCCAAAATCTTCATCAGCTTCTTTGGTACATTCTAATGATACCAATATTTTGTCTTGAATTGAAGATCTATGGACAGTGGATGTCTGGGGGACAAAGGAGGCTATCAAAAGTGGCCAACCCTTCAAATCACCTCTCAATTGTTGGGAATTTTGTTGGGGCATTACTTGGTGCATCTATGGGTCTAAAAGAAGGACCTATTTTCTTCTTTGCTGTGGGGTTGGCTCACTACACTGTGNTGTTTGTAACTCTATATCAAAGACTTCCAACAAATGAGACCCTCCCTAAAGANCTACACCCAGTGTTCTTTCTCTTTGTTGCAGCACCTAGTGTTGCTTCCATGGCATGGGCTAGGATTCAGGGCTCTTTTGATTATGGATCAAGGATTGCCTACTTCATTGCCCTGTTCCTTTATTTCTCACTGGCTGTCCGGATCAATTTTTTCAGAGGATTCACATTCTCACTTGCATGGTGGGCATATACTTTTCCAATGACTGGTGCAGCAATTGCAACCATAAGATACTCAAATCAAGTCCCAAATGTTGTTACCAAGACATTGTGTGTTGTACTTGCTCTCATCTCCACATTCACTGTGACAGCACTACTTGTATCAACTATGTTACATGCCTTTGTCTTCAGAGACCTCTTCCTCAATGACATTGCCATTGCCATAAGTGATAGGAAGAGAAAACCACATAAGAAGTGGTTGGGTTTTAGATATGGGAGCCAAGATTCTAAGGAGATTGAAAACTACTTGAAGTTTGTGAATAAGGATGAGATTAATTTGGAAGATTCTGCCCCACAATCCAGTAGTGGCACAAATAATTCACCATATAGCTGAAGATATTTGTTTCTATCAAGGTTTTAAATTACGGTCGCGGTCCTTGATATAGTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01666	32624	36477	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006873 cellular ion homeostasis

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008308 voltage-gated anion channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001666s00042238.1	PF03595.12	SLAC1	217	521	1.70E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.620
SRR1783600	control	1.644
SRR1783602	moderate drought stress	2.801
SRR1811619	moderate drought stress	2.770

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.501
DRR006520	Root Summer glycyrrhizin high producing strain	0.451
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.025
DRR006524	Root Summer glycyrrhizin low producing strain	0.121
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.713

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.624
SRR2868004	Drought Stress (root)	19.769
SRR2967015	Control (root)	14.778

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.748
SRR9715740	Leaf	4.099
SRR9715741	Leaf	5.987
SRR9715739	Root	0.698
SRR9715742	Root	1.131
SRR9715743	Root	0.652

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.034
SRR8749028	MeJA induced 9h	17.627
SRR8749029	MeJA induced 9h	20.311
SRR8749030	Uninduced	66.732
SRR8749031	Uninduced	63.512
SRR8749032	Uninduced	47.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.100
SRR8400027	Control - Root	4.172