Gene detail

Gene detail information of Glyur001663s00027486.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G55020.1	lipoxygenase 1
NR	XP_003531600.2	PREDICTED: LOW QUALITY PROTEIN: linoleate 9S-lipoxygenase-like [Glycine max]
Swissprot	tr\|P38414\|LOX1_LENCU	Linoleate 9S-lipoxygenase
trEMBL	tr\|S5XAM1\|S5XAM1_VIGRA	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur001663s00027486.1
AGGCCGGTCATAGCATATAGTACTATTAAATTAAATGAATAATGATGCAACGGATATATTACTATTTTATACACCGCGAGAGGTGGAGCCAAAGTGCCAAACTGTGTTTTGCACGTGTTGTTAATTAGTTTCTCAAAAAAACAAAAACACAATTAAAAAATCAGAACTACGAAGTATGAACCATCCTTCTTCTAAATCTGAACATCTTGCTTGGCCTTTATAAATACTCTGCACTTCCATGCTTGGAAGCCACGAGCTTTTCTCTCATTTGCCACAAGACATTACAGTACACAGTGTGTGTTTGGAGAAGAAACAGGAAATTAATCTGATCAAAGATGTTTTCAGGGGTGACAGGTCTTGTTAACAGGGGCCACAAGGTGAAGGGTACTTTGGTGTTGATGCAAAAGAATGTATTGGACATCAACGCTCTCACATCTGCTCAGAGTGCCACTGGCATCCTCGGTGGTGCACTCGGTGCTCTTGGTGGTGCCCTTGGCTCTGCTGTTGATACCCTCACTTCCTTCCTTGGCCGTTCCGTTGCTCTCAGGNTGATCAGTGCTACCAGTGCTGATGGAACTGGAAAAGGGAAAGTGGGAAAGCAAACCTTTTTGGAAGGTCTTATTACCTCACTACCAACCCTGGGAGCAGGACAGTCTGCATTCGATCTTCATTTTGAATGGGACAGTGACATGGGCATTCCCGGAGCATTTTACATCGAGAATTTCATGCAAGGTGAATTCTTCCTTGTGAGTTTGACCCTTGAAGATATTCCCAACCATGGAACCATCCACTTTGTTTGCAACTCCTGGGTTTACAATGCCAAAAAGTACAAAACAGACCGCATTTTCTTCGCCAACAAGACATACCTTCCAAGTGAAACACCAGCTCCATTGGTGTACTACAGACAAGAGGAACTGAAGACTTTAAGAGGAGATGGAACAGGAGAGCGCAAAGAACATGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGCAACCCTGACAGTAACCAAAGGTTGGCTCGTCCTGTTCTTGGAGGAAACAGCGCCTTGCCTTACCCACGAAGGGGGAGAACTGGCAGAAAGCCAGCTAAGAAAGATGTTTTAGCACAAATTAATGATATGGCTATCCAAAACAACAGATTGTTCATACTAGATCACCATGACCCACTCATTCCATATTTGAGGCGAATAAACGCAACTGACACGAAGGCCTATGCTACTAGAACCATCCTTCTCTTGCAGAATGATGGAACTTTGAAGCCATTGGCTATTGAGCTAAGTAGGCCACATCCTCAGGGTGATAATTTTGGTCCTATTAGCAACGTTTACTTNCCTGCTCAACAAGGAGTTGAATCTTCTATTTGGCAACTTGCCAAGGCATACGTAGTTGTAAATGACTCCTGCTATCACCAACTTGTCAGCCATTGGTTAAACACTCATGCGGTTGTTGAGCCATTCGTCATAGCAACCAACAGACATCTTAGTGTGGTTCACCCTATTCACAAACTTCTGCTTCCACACTATCGTGACACAATGAACATAAATGCACTTGCACGAAATGTCCTGGTCAATGCAGAGGGTATTATAGAATCAACATTCCTGTGGGGAAGATATTCTTTGGAAATGTCTGCTGTTGCATACAAGGATTGGGTTTTCCCTGAGCAGGCACTACCTGCTGATCTACTCAAGAGAGGAATGGCTGTTGAGGATCCATCTTCCCCGCATGGTATTCGCCTTTTGATAGAGGACTATCCTTATGCTGCTGATGGTCTAGACATATGGGCAGCTATCAAGTCCTGGGTTTCAGAATATGTCAATTTCTACTACAAGTCAGATGCTGCTATTGCACAAGATGCNGAACTCCAAGCATTCTGGAAAGAGCTTGTAGAGGTGGGTCATGGTGACAAGAAGAATGAGCCATGGTGGCCAAAGATGCAAACGCGTGCAGAGTTGATTGAATGCTGCAGTACCCTCATATGGACTGCTTCAGCCCTTCATGCAGCTGTTAATTTTGGACAATACCCATATGGAGGTTATATCCTTAACCGACCAACTCTCAGCAGGAGATTCATGCCAGAGAAGGGATCCCCAGAGTATGATGAGCTTTCTAAGAACTTCCAGAAGGCGTATTTGAGGACAATCACNCCAAAGAATGACACCCTTACTGACCTGACAATTATAGAGGTCTTGTCAAGGCATGCTTCTGATGAGTTGTACCTTGGACAGAGAGACGGTGGTGACCTTTGGACTTCTGATTCACTGCCATTAGAGGCCTTCAAGAGGTTNGCAAAGAAGTTGGCTGAAATTGAGCAAAAGCTCATCCAAAGGAACGAGGATGAGACACTGAGGAACCGGTCTGGGCCAGTGAAGATGCCCTACACTCTGCTTTATCCTTCTAGTGAGGAAGGATTGACTTTCAGAGGCATTCCTAATACAAGTGGAAAAGGGANACTCGGAAAAGGAGCTTATTTAAAAAGTGCAATTAACAATTTGCCAACCCTGGGAGACAAGCAAACTGCACTCCGCATTGAGTTTGATTATGATAGTGACTTTGGAATTCCCGGAGCATTTTATATTAAGAACTTTATGACAAGTGAGTTCCTCCTTATCAGTTTGACTCTTGAAGATATCCCTAACCATGGAACCATCCACTTTGTTTGCAACTCCTGGGTTTACAATGCAAAAAAGTACAAAACAGATCGCATTTTCTTCGCCAACAAGACATACCTTCCAAGTGAAACACCGGCTCCATTGGTGTACTACAGAGAAGAGGAACTAAAGACTTTGAGAGGAGATGGAACGGGAGAGCGCGAAGAACATGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGCATCCCTGATCAGAAGGAAAGTTTGGCTCGTCCTGTTCTTGGAGGAAACAGTGCCTTGCCTTACCCTCGAAGGGGGAGAACTGGCAGAAAGCCAACTAGGAAAGATCCTAAAAGTGAGAGTCGCAGTGACTCTTTTTACCTTCCAAGAGATGAATCATTTGGTCACTTGAAGTCCTCAGACTTTCTTGTCTACGTACTTAAATCTGCAGCCCAAAATGTTATCCCTCGATTGCGATCTGTGGTTACTTTGCAATTGAATGAGCCTGAGTTTAACACCTTTGATGATGTGCGTTCACTNTATGACGGTGGAATTAAGCTGCCTACTGATATACTTAGTGAACTTAGTCCCATACCGTTGTTCAAGGAACTCTTCCGAACTGACGGTGAACAGGCCCTTAAGTTTCCACCACCTAAAGTGATTCAAGTGGATCAGTCTGCATGGATGACTGATGAAGAATTTGCAAGGGAGATGATTGCTGGTGTAAATCCACACATCATTAAAAAACTTCAGGAGTTCCCACCAAGGAGCAAGCTAGATAGCCAACTCTATGGTGATAATACCAGTACAATAACCAAANAACACTTGGAGCCAAACATGGGCGGGATCACTGTAGAACAGGCTATCCAAAACAACAGATTGTTCATACTAGATCACCATGACCCACTCATTCCATATTTGAGGCGAATAAACGCAACTGACACAAAGGCCTATGCTACCAGAACCATCCTTCTCTTACAAAATGATGGAACTTTGAAGCCATTGGCTATTGAGCTAAGTAGGCCACATCCTCAGGGTGATAACTTTGGTCCTGTTAGTAATGTTTACTTGCCTGCACAACAAGGTGTTGAAGCTTCTATTTGGCTACTTGCCAAGGCATANGTAATTGTAAATGACTCCTGCTATCACCAACTTGTCAGCCATTGGTTAAACACTCATGCGGTTGTTGAGCCATTCGTCATAGCAACAAACAGGCATCTTAGTGTGGTTCACCCTATTCACAAACTTCTGCTTCCACACTATCGTGACACAATGAACATAAATGCACTTGCACGAAATGTCCTGGTCAATGCAGAGGGTATTATAGAATCAACATTCCTGTGGGGGAGATATTCCTTGGAAATGTCTGCTGTTGTATACAAGGATTGGGTTTTCCCTGAGCAGGCACTACCTGCTGATCTACTCAAGAGAGGAATAGCTGTTGAGGATCCAGCTTCCCCGCATGGTATTCGCCTTTTGATAGAGGACTATCCTTATGCTGCTGATGGACTAGAGATATGGGCTTCTATCAAGACATGGGTTTCAGAATATGTCAATTTCTACTACAAGTCAGATGCTGCTATTGCACAAGATGCNGAACTCCAAGCATTCTGGAAAGAACTTGTAGAGGTGGGTCATGGTGACAAGAAGAATGAGCCNTGGTGGCCAAAGATGCAAACGCGTGCAGAGTTGATTGAAAGTTGCANCACCCTCATATGGACTGCTTCAGCCCTTCATGCAGCTGTTAATTTTGGACAATACCCATATGGAGGTTTTATTCTTAACCGACCAACACTCAGCAGGAGATTCATGCCAGANATAGGATCCCCTGAGTATGATGAGCTTTCTAANAACCCCCAGAAGGTGTTTTTGAGGACAATCACATCAAAGAATGATACCCTTACTGACCTAACAATTATAGAGGTCTTGTCAAGGCATGCTTCTGATGAGTTGTACCTTGGACAGAGAGATGGTGGCGACCTTTGGACTTCNGATTCACTGCCATTAGAGGCCTTCAAGAGGTTTGGAAAGAAGTTGGCTGAAATTGAGCAAAAGCTCATCCAAAGGAACAATGATGAGACACTGAGGAACCGGTATGGGCCAGTGAAGATGCCCTACACTCTGCTTTATCCTTCTAGTGAGGAAGGATTGACTTTCAGAGGCATTCCTAATAGTATCTCCATCTAAAGGGGTTTATGGCTATATTGCACCTGTGAATAAAAGATGNGAAGGAATCCATTTCCCTCATCCCCCTATGTATGGTTGTGTTTTGTGTTTGTCTGATTGTTATTACGTTTTATTGATGATGAAAGATGAGAAGGAATCTAATTCCCTCATCCCCCGTGTATGGTTGTATTATATATGTGTTTGTTTGGTTGTTATGACGTTTTACATCAGTAAGAACTATGTTTGTACCTTGTACCGTGCTAGGCTTGCAATATGACATGCAACCTTCATATATGGAATTAATGAATTGTAAACATCGAGGCTTGTACAAAGCTAGC

Protein Sequence

>Glyur001663s00027486.1
MFSGVTGLVNRGHKVKGTLVLMQKNVLDINALTSAQSATGILGGALGALGGALGSAVDTLTSFLGRSVALRXISATSADGTGKGKVGKQTFLEGLITSLPTLGAGQSAFDLHFEWDSDMGIPGAFYIENFMQGEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKKYKTDRIFFANKTYLPSETPAPLVYYRQEELKTLRGDGTGERKEHERIYDYDVYNDLGNPDSNQRLARPVLGGNSALPYPRRGRTGRKPAKKDVLAQINDMAIQNNRLFILDHHDPLIPYLRRINATDTKAYATRTILLLQNDGTLKPLAIELSRPHPQGDNFGPISNVYXPAQQGVESSIWQLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGRYSLEMSAVAYKDWVFPEQALPADLLKRGMAVEDPSSPHGIRLLIEDYPYAADGLDIWAAIKSWVSEYVNFYYKSDAAIAQDAELQAFWKELVEVGHGDKKNEPWWPKMQTRAELIECCSTLIWTASALHAAVNFGQYPYGGYILNRPTLSRRFMPEKGSPEYDELSKNFQKAYLRTITPKNDTLTDLTIIEVLSRHASDELYLGQRDGGDLWTSDSLPLEAFKRXAKKLAEIEQKLIQRNEDETLRNRSGPVKMPYTLLYPSSEEGLTFRGIPNTSGKGXLGKGAYLKSAINNLPTLGDKQTALRIEFDYDSDFGIPGAFYIKNFMTSEFLLISLTLEDIPNHGTIHFVCNSWVYNAKKYKTDRIFFANKTYLPSETPAPLVYYREEELKTLRGDGTGEREEHERIYDYDVYNDLGIPDQKESLARPVLGGNSALPYPRRGRTGRKPTRKDPKSESRSDSFYLPRDESFGHLKSSDFLVYVLKSAAQNVIPRLRSVVTLQLNEPEFNTFDDVRSLYDGGIKLPTDILSELSPIPLFKELFRTDGEQALKFPPPKVIQVDQSAWMTDEEFAREMIAGVNPHIIKKLQEFPPRSKLDSQLYGDNTSTITKXHLEPNMGGITVEQAIQNNRLFILDHHDPLIPYLRRINATDTKAYATRTILLLQNDGTLKPLAIELSRPHPQGDNFGPVSNVYLPAQQGVEASIWLLAKAXVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGRYSLEMSAVVYKDWVFPEQALPADLLKRGIAVEDPASPHGIRLLIEDYPYAADGLEIWASIKTWVSEYVNFYYKSDAAIAQDAELQAFWKELVEVGHGDKKNEPWWPKMQTRAELIESCXTLIWTASALHAAVNFGQYPYGGFILNRPTLSRRFMPXIGSPEYDELSXNPQKVFLRTITSKNDTLTDLTIIEVLSRHASDELYLGQRDGGDLWTSDSLPLEAFKRFGKKLAEIEQKLIQRNNDETLRNRYGPVKMPYTLLYPSSEEGLTFRGIPNSISI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01663	46709	58263	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15718	LOX1_5	EC:1.13.11.58	Linoleic acid metabolism	map00591

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001663s00027486.1	PF01477.18	PLAT	82	172	2.10E-18
Glyur001663s00027486.1	PF00305.14	Lipoxygenase	183	257	1.70E-31
Glyur001663s00027486.1	PF00305.14	Lipoxygenase	263	689	2.00E-215
Glyur001663s00027486.1	PF01477.18	PLAT	721	794	1.30E-15
Glyur001663s00027486.1	PF00305.14	Lipoxygenase	805	1474	0

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1204.306
SRR1783600	control	1199.814
SRR1783602	moderate drought stress	1219.820
SRR1811619	moderate drought stress	1250.046

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	245.646
DRR006520	Root Summer glycyrrhizin high producing strain	244.649
DRR006521	Root Winter glycyrrhizin high producing strain	7.406
DRR006522	Root Winter glycyrrhizin high producing strain	7.022
DRR006523	Root Summer glycyrrhizin low producing strain	24.994
DRR006524	Root Summer glycyrrhizin low producing strain	24.883
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.785
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.739

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1849.144
SRR2868004	Drought Stress (root)	810.046
SRR2967015	Control (root)	1135.175

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	108.089
SRR9715740	Leaf	3.634
SRR9715741	Leaf	30.106
SRR9715739	Root	1526.383
SRR9715742	Root	1968.970
SRR9715743	Root	1900.315

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.656
SRR8749028	MeJA induced 9h	6.437
SRR8749029	MeJA induced 9h	3.454
SRR8749030	Uninduced	14.415
SRR8749031	Uninduced	4.278
SRR8749032	Uninduced	57.542

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1355.201
SRR8400027	Control - Root	765.341