Gene detail

Gene detail information of Glyur001663s00027483.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72710.1	0	casein kinase 1-like protein 2
NR	XP_004510406.1	0	PREDICTED: casein kinase I isoform delta-like [Cicer arietinum]
COG	YP_632759.1	9.00E-18	serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622]
Swissprot	tr\|P42158\|KC1D_ARATH	0	Casein kinase I isoform delta-like
trEMBL	tr\|G7LI85\|G7LI85_MEDTR	0	Casein kinase I-like protein {ECO:0000313\|EMBL:AET01635.1}

Sequence

Transcript Sequence

>Glyur001663s00027483.2
AAGAGAAGAAATATATGTATCAAAAAAAAAGAGAAGAAATATTTCGCAAAATCAAAAGAAGAATTAAACGAAGAAAACAACGTCGTTTCAACTTTCAAGAAGTTTCCGTCCGAAAAATCCAAAAAACACCGGTAGGTTGGTGAATGAAAAGCGTGAGGCAGGCGAGGAAGTTGAGCGCGTGACGACGACGACGGGTTTTGGTTGAATGGAACCTCGAGTTGGGAACAAGTTTCGTCTTGGTCGGAAGATTGGTAGCGGATCCTTCGGGGAGATCTATCTCGGTACCAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGAAACTGTCAAAACCAAGCACCCTCAATTGTTGTATGAAGCAAAGCTGTATAAATTACTGCAAGGAGGAACTGGGATTCCGAATGTGAAATGGTCAGGTGTCGAAGGAGACTACAATGTCCTTGTGATGGATTTGCTTGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAATCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAAATGATAAATCGAGTTGAATTTGTTCATTCCAAGTCATTTTTACATCGGGATATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATATCATTGACTTCGGTCTTGCTAAGAAATACAGAGACACCACTACACATCAGCATATTCCCTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGGTATGCCAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGATGATTTAGAGTCACTTGGCTATGTTCTTNTGTATTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCAGGTAATAAGAAGCAGAAGTATGATAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCATCATATTTCCATTACTGTCGGTCACTGAGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGACTTCTGCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTCGATTGGACCATTTTGAAATATCAGCAATCTCAAATCACCACTCCTCCTGCCCGTGCTATTGGTCCTGCTGCTGGACCAAGTTCTGGTATGCCACTACCTTTTGCAAATGCTGATGGACAGTCAGGTGGAAAAGATGGTAGGCNTACTGGGTGGTCTTCATCTGATCCTAATCGTAGGAGAAACTCTGGACCTATTGCCAATGATGGAATGTCATCCAGACAAAAAGCCCCACTACCAAGTGACTCAACTGGATCTAAAGATGTTATGTTCTCAAGTTCTAATTTCTTCCGGTCAAGTGGATCTGCAAGACGAGGTGCTGTCTCAGGNAGCCGTGATGCAGTTATTGGTAGTGAAACTGAGCCCTCTCATCCTCTCACGCTGGATTCAAGGGAGGGTGCACTTCGTAAAAGCTCTGGTGCTCAGAGAAGTTCACCTATCATGTCATCCGAGCACAACCGAGCATCATCTGGCAGAAACACATCAAACGTAAAGAGTTTGGAGTCAACTCTTAGAGGTATTGAGAGCCTGCATATCAACAATGAGAGGGCACAATATTAGTAGCTGCTACTCTCCATCACCTTCCTTCCTTGTAAATTCTGAAACGTCTACACTCATTTTCACAAACTATGGAGTGTTGTTGTTTGTGAATTGTGCTGAAGAAAAGCTTTAAACAAATTGGGAATTATCCCCATAAGTTTACAGTAAAGATATGATTTGGTGGTTTCCTAACAAAGCGGGCCTTGTAAAAGGTTTCTGTTCATAAAGTATATGTTATACTATCGCTTTCTCTTTTGATTTCTTTGATATTTTTAGCCTATTTTGAAGGATAAAGCATATCGATTATAGAACTATCCGTAGGGGAATTATANTATTTCGTGAGCANGATGTGAACCTGAGTTGTGTTGTTTTATCATGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01663	31737	36762	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02218	CSNK1, CKI	EC:2.7.11.1	MAPK signaling pathway - yeast	map04011
			MAPK signaling pathway - yeast	map04011
			Hippo signaling pathway - multiple species	map04392
			Hippo signaling pathway - multiple species	map04392

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001663s00027483.2	PF00069.20	Pkinase	9	253	1.10E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.291
SRR1783600	control	39.996
SRR1783602	moderate drought stress	41.540
SRR1811619	moderate drought stress	41.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.402
DRR006520	Root Summer glycyrrhizin high producing strain	28.503
DRR006521	Root Winter glycyrrhizin high producing strain	48.460
DRR006522	Root Winter glycyrrhizin high producing strain	47.314
DRR006523	Root Summer glycyrrhizin low producing strain	34.339
DRR006524	Root Summer glycyrrhizin low producing strain	34.363
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.740
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.488

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.861
SRR2868004	Drought Stress (root)	82.462
SRR2967015	Control (root)	80.873

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.803
SRR9715740	Leaf	54.281
SRR9715741	Leaf	58.973
SRR9715739	Root	21.482
SRR9715742	Root	30.869
SRR9715743	Root	30.290

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.516
SRR8749028	MeJA induced 9h	36.625
SRR8749029	MeJA induced 9h	21.745
SRR8749030	Uninduced	39.119
SRR8749031	Uninduced	22.863
SRR8749032	Uninduced	19.428

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.945
SRR8400027	Control - Root	53.177