Gene detail

Gene detail information of Glyur001663s00027481

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17500.1	0	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NR	XP_004510404.1	0	PREDICTED: putative phospholipid-transporting ATPase 4-like isoform X4 [Cicer arietinum]
COG	NP_389448.1	3.00E-23	calcium-transporting ATPase [Bacillus subtilis subsp. subtilis str. 168]
Swissprot	tr\|Q9LNQ4\|ALA4_ARATH	0	Putative phospholipid-transporting ATPase 4
trEMBL	tr\|K7KYW6\|K7KYW6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G00980.4}

Sequence

Transcript Sequence

>Glyur001663s00027481.1
CTCTCTCTCTCTCTCTCTCTCAACACTTTTATTTTGTCTCCTTCCTTGATCTGCAACCCGCAATACGCGTAACGTTGCTCTGCTCCCTCTTCTTCCTCCTCCCATTTGCAGCATTGCTACGTTGATTCCTCAACTTTGAACGGGGGCCCTCCCGTTTGGTTTTAGAAGAACAAATCGGGGAGAAGGGGGCAGTTTGATGATTCCCCCTAGATGCTAGATTTGGGTTTTCTTCTTGGTATGGGTATGTGTTAAAGAGAACTCTACCTTGAGCTGAATTTTTCAGCTAAATGACACGGGGGAGGATAAGGGCAAGGCTCCGAAGGAGCCATTTTTACACATTTGGTTGCCTTCGGCCTTCTACCACTGAAGAGGCGCCTCATCCACTTCAAGGTCCCGGGTACTCGCGAACCGTGTACTGCAACCAGCCTCAGCTCCATGAAAAGAGACCTTTATATTACTGCAGGAATGATATATCCACGACCAAATACAATGTTCTTACGTTTTTCCCCAAGGCACTTTTTGAACAGTTCCGNAGAGTTGCTAATATATACTTCCTTTTGGCTGCGTGCCTCTCAGCCTCCCCAATTTCACCTTTCAGNGCACTGAGCATGATTGCTCCTTTGGCATTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCATTGGAGGATTCACGCAGGTTCGTTCAGGATGTCAAAGTTAACCGCCGGAAAGTTAATCACCATAAAGGCGATGGTGTTTTTGGTCCCAGGTCATGGCAGAACATTATGGTTGGGGATGTGGTCAAGGTAGAAAAGGATAAGTTTTTTCCAGCTGATTTGCTTCTCTTGTCTTCAAGTTATGAGGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGTGAGACCAACTTGAAGGTGAAAAGATCTTTGGAGTCTACCTTGGCCCTGGATAGTAATGGGTCTTTTAAAGATTTCGCTGGAACAATACGATGTGAAGACCCAAACCCCAATCTTTACACTTTTGTTGGAAACTTTGAGTATGAGCGCCAGGTTTATCCTCTTGATCCTAGTCAGATTCTCCTCCGAGATTCTAAGCTCAGGAACACTGAATACATCTATGGGGTGGTCNTTTTCACTGGTCATGACAGCAAAGTCATGCAGAATTCCACAAGATCCCCTTCAAAAAGGAGCACGATAGAAAGGAAGATGGATTATATCATATACACCCTCTTCACTGTCCTTATTTTGATATCCGTCATTAGTTCCATAGGATTTATCGTCAAGACCAAGTACCAAACCACAGAGTGGTGGTACCTACGGCCTGACAATATTGAATACCAGTATGATCCCCAGAAAATTGGAGTGGCTGGGATGAGCCATTTGATTACTGCTCTCATTCTTTANGGATATTTGATACCCATCTCACTTTATGTTTCCATTGAGGTTGTGAAGGTTTTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGAAGAAACCGGAACTCCAGCTGATGCGCGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGATACTATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAATGCTCCATTGCTGGTACTCCATATGGTGTGCGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATAGCTTCCGATCTTGAGGACGAGGATTCAGATCTCTCCAATTTCCCCATGCCAAATACTAGGGCGCAAGTTTCATGGGAAAATGTTGGAAGAGCTGAAGAAATTGAACTGGAGACTGTTGTTACTTCCAAAGGTGATGAGGATCAAAGGCATACCATAAAGGGATTTGGTTTTGAAGACAACCGTCTCATGGATTGTAATTGGTTGAACGAGCCCAATGCCGATGTCCTTTTATTGTTTTTCCGAATACTAGCAGTTTGCCACACTGCCATTCCTGAGCTGAATGAGGAGACGGGCAGTTTTACATATGAAGCTGAGTCACCAGATGAAGGGGCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTTGAGTTTTGTAGGAGGACTCAGTCAAGTATTTTCATACGTGAAAGACTTTCTGCCTCAGGGCAAGTGGTTGAAAGGGAGTACAAACTCTTGAATCTGCTGGATTTCACAAGTAAAAGAAAGCGTATGTCAGTGATTGTCCGTGATGAGGAGGGCAAACTTTTTCTTCTGTGCAAAGGGGCTGACAGTATCATATTCGATCGTTTGTCAAAGAATGGAAAAATGTATTTGGAGGCTACTACCAAACATTTAAATGATTATGGAGAAGCAGGTTTGCGAACACTAGCTCTGGCTTATAGAAGGCTTGATGAGCAAGAGTACTCTGCTTGGAACAATGAGTTTCAGAAAGCCAAAACAGCTGCTGGGGTTGACAGAGAGGCAACTCTTGAGCGGGTATCAGAGATTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAGGACAAACTGCAGAAAGGGGTTCCCCAGTGTATTGATAAACTTGCTCAAGCTGGTCTCAAGATCTGGGTACTGACAGGGGATAAGATGGAAACTGCAATCAACATAGGGTCTGCCATCAAGGACAACATTTTGAATCAGATCACCAATGCTTCACAAATGATAAAGCTGGAGAAGGATCCTCATGCTGCCTTTGCATTAATTATTGATGGGAAAACTTTGACATATGCTTTAGAAGATGATATGAAGCACCAATTTTTGGGATTGGCAGTTGATTGTGCATCTGTCATCTGCTGTCGTGTGTCTCCCAAGCAAAAGGCACTGGTTACAAGGTTGGTAAAAGAAGGAACTGGGAAGACCACTCTTGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCAGATATCGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCNAGTGACTTTTCGATTGCCCAATTTAGATTTTTGGAGCGGCTTCTGGTGGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATCTGTTACTTCTTCTACAAGAATATNGCATTTGGCCTCACCATCTTCTATTTTGAGGCCTTTACAAGCTTCTCTGGTCAATCGGTTTATAATGACTGGTACATGATATTGTTCAATGTTGTTCTGACATCATTACCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTTCCGTCGGAAGTTTGTTTACAGTTTCCTGCTTTGTACCAACAAGGACCCAAAAATTTGTTCTTTGACTGGTACAGAATATTGGGGTGGATGGCCAATGGTGTGTATTCCTCCCTCATCATCTTCTTCCTTAACACNGCCATCTTCTACGATCAAGCATTCCGTGTCGATGGCCATACAGCTGACATGGCTGCTGTCGGGACCACAATGTTCACTTGCATCATCTGGGCGGTCAACTGCCAGATTGCACTGACAATGAGCCATTTCACATGGATTCAGCACCTGTTTGTATGGGGCAGCATAGTCACATGGTACCTCTTTCTCATGTTATATGGCATGCTTTCTCCTGAATATTCCAGGAGTGCCCACCAAATACTGGTAGAAGCTCTTGGTCCTGCACCAATTTATTGGACAGCAACAGTTCTAGTTACAATTACATGCAATCTTCCTTATCTTGTCCACATATCCTTCCAAAGATGTTTCAATCCCATGGATCACCACATCATCCAAGAAATCAAGTACTACAAGAAGGATATTGAGGATCAACACATGTGGACAAGGGAGCGTTCTAAAGCCAGACAAGAAACCAAGATTGGGTTCACTGCAAGAGTGGAAGCAAAGATCAGACAATTGAAAGGAAGGCTGCAGAAGAAGCAATCTTCCATAACTGTTTTGTCCTCCCCATCGTAACACGACATGCATAATTAACAGTTTTNGGTATATTTAGGCTTTGCGGGTTCTCTGTTTTTTTATATCTTTTTTAAATTTTACCCCCTTTAAATTCTTTATATTGTTTCATCAAACGGGGTGAATTAAAGTCCCATTCACTACGGAAAAAGCGTGTAAGCTGTTGTATGTAACATATATACGTAG

Protein Sequence

>Glyur001663s00027481.1
MTRGRIRARLRRSHFYTFGCLRPSTTEEAPHPLQGPGYSRTVYCNQPQLHEKRPLYYCRNDISTTKYNVLTFFPKALFEQFRRVANIYFLLAACLSASPISPFXALSMIAPLAFVVGLSMAKEALEDSRRFVQDVKVNRRKVNHHKGDGVFGPRSWQNIMVGDVVKVEKDKFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLALDSNGSFKDFAGTIRCEDPNPNLYTFVGNFEYERQVYPLDPSQILLRDSKLRNTEYIYGVVXFTGHDSKVMQNSTRSPSKRSTIERKMDYIIYTLFTVLILISVISSIGFIVKTKYQTTEWWYLRPDNIEYQYDPQKIGVAGMSHLITALILXGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTPYGVRSSEVELAAAKQIASDLEDEDSDLSNFPMPNTRAQVSWENVGRAEEIELETVVTSKGDEDQRHTIKGFGFEDNRLMDCNWLNEPNADVLLLFFRILAVCHTAIPELNEETGSFTYEAESPDEGAFLVAAREFGFEFCRRTQSSIFIRERLSASGQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGKLFLLCKGADSIIFDRLSKNGKMYLEATTKHLNDYGEAGLRTLALAYRRLDEQEYSAWNNEFQKAKTAAGVDREATLERVSEIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGSAIKDNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKHQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNXAFGLTIFYFEAFTSFSGQSVYNDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMANGVYSSLIIFFLNTAIFYDQAFRVDGHTADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSIVTWYLFLMLYGMLSPEYSRSAHQILVEALGPAPIYWTATVLVTITCNLPYLVHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGRLQKKQSSITVLSSPS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01663	23507	30772	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015914 phospholipid transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0000287 magnesium ion binding

GO:0004012 phospholipid-translocating ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001663s00027481.1	PF00122.15	E1-E2_ATPase	118	387	2.00E-15
Glyur001663s00027481.1	PF12710.2	HAD	421	864	4.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.499
SRR1783600	control	15.555
SRR1783602	moderate drought stress	8.892
SRR1811619	moderate drought stress	8.838

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.061
DRR006520	Root Summer glycyrrhizin high producing strain	10.953
DRR006521	Root Winter glycyrrhizin high producing strain	3.945
DRR006522	Root Winter glycyrrhizin high producing strain	3.902
DRR006523	Root Summer glycyrrhizin low producing strain	18.711
DRR006524	Root Summer glycyrrhizin low producing strain	18.459
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.081
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.020

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.465
SRR2868004	Drought Stress (root)	18.745
SRR2967015	Control (root)	19.856

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.661
SRR9715740	Leaf	2.492
SRR9715741	Leaf	3.836
SRR9715739	Root	2.106
SRR9715742	Root	12.308
SRR9715743	Root	10.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.551
SRR8749028	MeJA induced 9h	60.895
SRR8749029	MeJA induced 9h	14.705
SRR8749030	Uninduced	29.208
SRR8749031	Uninduced	7.242
SRR8749032	Uninduced	4.902

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.315
SRR8400027	Control - Root	19.909