Gene detail

Gene detail information of Glyur001663s00027476

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	4.00E-123	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003617005.1	0	Disease resistance protein [Medicago truncatula]
COG	YP_005320665.1	7.00E-13	putative lipoprotein [Saprospira grandis str. Lewin]
Swissprot	tr\|Q40392\|TMVRN_NICGU	8.00E-123	TMV resistance protein N
trEMBL	tr\|G7KCQ4\|G7KCQ4_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:AES99963.1}

Sequence

Transcript Sequence

>Glyur001663s00027476.1
ATGGGTAATCCTAATGGGGGTGGTGTATCCTATGCTGCCAAGAAGCACGATGTGTTTCTTAGCTTCAGGGGTGAGGATACCCGTGTTGGGTTCACCAGCCATCTCTATGATGCCCTGAGTCAGAAATCAATCAAAACCTACATAGATTACCAGCTTAACAGAGGAGAAGATGTTTGGCCAGCACTCGAGAAAGCAATCGAGGACTCCCATTTATCCGTTGTTGTTTTCTCAGAAAACTACGCTACCTCAAAGTGGTGCCTGGAAGAACTGGGGCAGGTTGTTATCCCTGTTTTCCATGAAACAGATCCGTCTCACATAAGGAAGCAGACCGGGAGTTACGAGAAGGCATTTGCGAAACATGAGCCAGATCTTGGGGACAAAAACAGCGAATCCAACAAACACAAAGTGCTTAACTGGAAAGCTGCTCTTACTGAAGCAGCCAATATATCTGGATGGGACTCTCGAACCCATAATCCAGAGGACAGAGGCAGAGAGGATGATGAAGAGACAGCTGTGAAAAATATTCACATCCCCAGTGTGAAAGAGTACAACACTATCCACGAAATGACTTATCATTCCAGAACCATTTACAACTGTAAAAACACCCACACCTTCAGTGTGAAAGACCTCATCGAGAACGTTGTCAATGATGTGTTGCAAAAGCTACAACTGAGGTACCCTAATGAACTAGAAGGCATTGTCGGAACTGAAAAAAACTGTCATTACGTGGAAACATTAATGAAAAGTGTTCGAGTACTTGGAATTTGGGGTATGGGGGGTATAGGAAAGACAACCATTGCGAAAGTCTTGTTTGCCAAACTCTTTGCACAATATGACCATGTCTGCTTGGCTAATGCAAAAGAATATTCACCTAGTAAGCTTCTCTCTGAGCTACTAAAGGAAGAAATTCCCCCATCTAATTTTGTAGGATCCACATTCCATATGAGGAGGTTGAGAAGTAAAAAGGTTTTTATAGTACTTGATAATGTTGATAGTTCGGATCAATTTGAATATTTGTGTAGAGATTACGGTGACCTAAGTAACAATAGTAGACTCATTATAACAACAAGAGATAGGCAATTGCTTAGTGAAAGAGTTGATTGGATATATGGGGTCAAGCAATGGGAAGATCCTGAATCTCTAGAGCTTTTTAGCTTAGAAGCCTTCAAGAAAAGTCATCCCCAAAAGGGTTACGAGGATCTCTCGCGAAGGGCAGTTGCTTATGCAGGAGGGGTTCCATTGGCTCTTAAAGTTTTGGGTTCATATCTTCGTTCCAAAGGTATTGGTTTTTGGGAGAGTACTTTCAGAAAACTTGATAAGTATCCTAAAGAGGAAATTCAAAAAGTCTTAAAAGTGAGCTACGATGGATTAGATCCACTAGAGAAGAAGATATTTCTAGACATTGCATTTTTTTTCAAAGGAGAAAAGGAAGATAGTGTCACAAGGATATTGGATGCTTGTGGTTTTGAAGCAAGTAATTGTGGCACAAACCCTGCAACACATACCCGACTGAGTGGAAGTGAAGCCCAAGAAGCGATCAAGGAAAACAAGGGGACTAGTTCAATTGAAGGCATAACATTAGATTTGACTCAAAATAATGATTTACCTTTGTGTGTTGACACATTCTCCAAGATGAAAGCCTTGAGAATTCTTAAATTCTATATCCCCTTGGGTCACAGTTGTAGTAATACATATCCCAACCTTCCCACATTTCTTAAGCCATTTTCTAATGAACTGAGGTATTTTGAGTGGATTGGATACCCTTTTGAGTCTCTTCCACAACCTTTTTGCGCTAAGTTGCTTGTTGAGATTCGCATGCCGCACAGCAATGTTAAACGACTATGGCAAGGGATGCAGGAACTTGATAAATTGGAGGAAATTGACCTAAGTGAATGCAGACATTTTGTAGAGCTTCCAGATTTGTCTAAGGCGTCAAGACTTAAACGGGTGAATCTCTCTGGTTGTGAAAGGTTAAGGTATCTTCATCAGTCTGTTTTATCCTCCAACACGCTTGTTACTTTGATTCTGGATAGGTGCACCAATCTTAGGAGTGTCAGAGCTAGGAAACATTTAAAATCTCTAGAGAAGATCAGTGTCAATGGCTGCACAAGCCTTGAGGAATTTGCAGTGTCCTCCGATTTAATTGAGAACTTGGATTTAAGCAGTACAGGAATCCAAACATTGGACCTATCAATTGGCCGTCTTCACAATCTTAAGCGGCTTAATCTTGAGAGTTTAAGACTCAACCATCTTCCAAAGGAGTTATCTAGCCTAACATCTATTAAGGACCTGAAGATTTCTGGTAGTGGACTAATGGTAGAGAAACAAGAGCTACATGTCTTGTTTCATGGCTTACGATCCTTACAAATACTATCTTTGAAGGATTGTAGAAACTTGTTTGAACTCCCAGACAACATCAGTGTCCTATCACAGTTACAGGAACTAAGGCTAGATGGAAGCAATGTGAAGTGGTTGCCTGAGAGCATCAAACATCTTGAAGAGTTGGAGATTCTGTCTTTGAAAAACTGCATGGAGCTTGAGCACATACCAGAGCTTCCACCTCTCATCAAAAGGTTATTAGCCATTAACTGCAAGTCACTGGTTTCAGTGTCAAGTCTAAAGACCCTGGCAACAAAAATGATGGGAAATGCCAAATACATTTCGTTAAGAAATAGCTTGAGCTTGGATGGGAATTCACTCAAATGCATCATGGAAAGTCTCCATTTAACAATGTTGAGTGCTGCATTTCAAAATGTGTTGGTAAGAAGACTCCGCGTGGCGGTTCACAGCTACAATTACACCTCTGTTGATGCTTGTTTCAGTTATCGAACAACCGAGTCGACCTCCATCGCAGTTCAACTTCCCAAGCGTTCCAACTTTCTGGGCTTCATTTACTCAGTGGTTCTTTCTCCAGCAGGTGGAATGAAAAAGGAAGGCACTAGAATAAAATGCCAGTGCCTCTTGGGAGAAGAAGGTGTAAAGACTACATGGGTATATAATGATGTCACGGAACTGAACTATGATCATGTTTATGTGTGGTATGATCCATTCCATTGTGACAGCATTCTCAAGTTTTATGAACCAAAGGTTTGTTTTGAGTTCTGTGTTGCGAATGATAACGGGGAAGTTGATGGTTCCATATGCATTAAAGAGTGTGGTGTAAGACTCATAAGCGTTGAAGAATTGCAGAGTGTTTTACCGGAATTGGATTTGGATTGGGATAAGAAAATGGACCTGAAGAAGGGAGTGGAGCTGGAATCGGGATGTAGCATTACCTTGACATCAGTAGAAACCTCTGATAAGAAGGAAAACGATGGCATGAAAAACCAGATGCAGAATCAACAACAGGACTTGAGTGAAATGAGTTCCAGCCATAGCATAGACGTCGAAGAACCACAGACTGCAAGGGTTGAAGCAGAATTAGTTGCAGAGAAGTCAAAGACCAAGCAGTCAGAAGAAAACAATAATCCACATCTACAACTACAAGGAGGACAAGTCCTTACTGTAACTGACACCGATGATTTGATCATCAGAGAAGAAGAACCATACCAGGAAATAGAAAATGAACCAATAATGGATCTTGCTGGCAAACCTGAAGGAGGTGAAGAATTAGATGGATCAGATGAGGACCTCCTTGCTGAACTCGAGAACTTCCTATCGGGAAGTCCAACAATGTCCTCGCCAAAAGCAATAACCTGTTCCACAACAACAAGCGATGTTGCTATAAGAGAAGCTTTGCATAACCTTGAACTCCTGTTGGAAAACTCACTTGAGTCCATTCTCGGTGACATCGAACTACAACAACAGTTACACGTGTCATTGGAATTCTTAAAACAAGCAGAAGTTGCTCCCAATGTTGCAAAGCTTGTGGAAAGCATGGGATCCTCTGCTGAGGGTCTTTTCAGAGAGTTTGCACTGGCTCAAAAAGTGGTGGAAGATCACATTGGGCGTTTGCAACAGAAGGAAGAGCTTATGCAGCGTGAAGAGGAAAGAGAGCTGGATGAAAAGATTCGGATTCTCGTTGAGCAAAAGAAGAGGGTGGAGTTGGAGAAAACCAAGTGGAAGGAGAGCATGGAAAGATGTGATGCGGAAAAGAAGAGACTGGAAGAGGAGGCTAAGGTGATGAAAGCGGAAGGCAAAGAGGTGATGTCGGTGATTGGGAATTCTAAAACCTCGTATGCCGCTGCACTGTCAAAGCAGCACAAGTTGAATGACAAATGGGAAGGTTTCAGGACAACTCTTGCTGACAACGGGGAATGA

Protein Sequence

>Glyur001663s00027476.1
MGNPNGGGVSYAAKKHDVFLSFRGEDTRVGFTSHLYDALSQKSIKTYIDYQLNRGEDVWPALEKAIEDSHLSVVVFSENYATSKWCLEELGQVVIPVFHETDPSHIRKQTGSYEKAFAKHEPDLGDKNSESNKHKVLNWKAALTEAANISGWDSRTHNPEDRGREDDEETAVKNIHIPSVKEYNTIHEMTYHSRTIYNCKNTHTFSVKDLIENVVNDVLQKLQLRYPNELEGIVGTEKNCHYVETLMKSVRVLGIWGMGGIGKTTIAKVLFAKLFAQYDHVCLANAKEYSPSKLLSELLKEEIPPSNFVGSTFHMRRLRSKKVFIVLDNVDSSDQFEYLCRDYGDLSNNSRLIITTRDRQLLSERVDWIYGVKQWEDPESLELFSLEAFKKSHPQKGYEDLSRRAVAYAGGVPLALKVLGSYLRSKGIGFWESTFRKLDKYPKEEIQKVLKVSYDGLDPLEKKIFLDIAFFFKGEKEDSVTRILDACGFEASNCGTNPATHTRLSGSEAQEAIKENKGTSSIEGITLDLTQNNDLPLCVDTFSKMKALRILKFYIPLGHSCSNTYPNLPTFLKPFSNELRYFEWIGYPFESLPQPFCAKLLVEIRMPHSNVKRLWQGMQELDKLEEIDLSECRHFVELPDLSKASRLKRVNLSGCERLRYLHQSVLSSNTLVTLILDRCTNLRSVRARKHLKSLEKISVNGCTSLEEFAVSSDLIENLDLSSTGIQTLDLSIGRLHNLKRLNLESLRLNHLPKELSSLTSIKDLKISGSGLMVEKQELHVLFHGLRSLQILSLKDCRNLFELPDNISVLSQLQELRLDGSNVKWLPESIKHLEELEILSLKNCMELEHIPELPPLIKRLLAINCKSLVSVSSLKTLATKMMGNAKYISLRNSLSLDGNSLKCIMESLHLTMLSAAFQNVLVRRLRVAVHSYNYTSVDACFSYRTTESTSIAVQLPKRSNFLGFIYSVVLSPAGGMKKEGTRIKCQCLLGEEGVKTTWVYNDVTELNYDHVYVWYDPFHCDSILKFYEPKVCFEFCVANDNGEVDGSICIKECGVRLISVEELQSVLPELDLDWDKKMDLKKGVELESGCSITLTSVETSDKKENDGMKNQMQNQQQDLSEMSSSHSIDVEEPQTARVEAELVAEKSKTKQSEENNNPHLQLQGGQVLTVTDTDDLIIREEEPYQEIENEPIMDLAGKPEGGEELDGSDEDLLAELENFLSGSPTMSSPKAITCSTTTSDVAIREALHNLELLLENSLESILGDIELQQQLHVSLEFLKQAEVAPNVAKLVESMGSSAEGLFREFALAQKVVEDHIGRLQQKEELMQREEERELDEKIRILVEQKKRVELEKTKWKESMERCDAEKKRLEEEAKVMKAEGKEVMSVIGNSKTSYAAALSKQHKLNDKWEGFRTTLADNGE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01663	12478	19276	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001663s00027476.1	PF01582.15	TIR	18	144	3.00E-25
Glyur001663s00027476.1	PF00931.17	NB-ARC	245	491	3.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.345
SRR1783600	control	1.348
SRR1783602	moderate drought stress	1.467
SRR1811619	moderate drought stress	1.476

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.742
DRR006520	Root Summer glycyrrhizin high producing strain	0.544
DRR006521	Root Winter glycyrrhizin high producing strain	0.052
DRR006522	Root Winter glycyrrhizin high producing strain	0.025
DRR006523	Root Summer glycyrrhizin low producing strain	0.145
DRR006524	Root Summer glycyrrhizin low producing strain	0.209
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.113
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.123

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.343
SRR2868004	Drought Stress (root)	14.604
SRR2967015	Control (root)	12.314

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.267
SRR9715740	Leaf	0.081
SRR9715741	Leaf	0.088
SRR9715739	Root	0.422
SRR9715742	Root	0.605
SRR9715743	Root	0.504

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.643
SRR8749028	MeJA induced 9h	11.929
SRR8749029	MeJA induced 9h	4.369
SRR8749030	Uninduced	43.500
SRR8749031	Uninduced	5.438
SRR8749032	Uninduced	2.166

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.250
SRR8400027	Control - Root	4.563