Gene detail information of Glyur001663s00027475 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41750.2 | 5.00E-30 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | AHG28976.1 | 0 | NBS-LRR protein [Cicer arietinum] |
| COG | YP_006866864.1 | 5.00E-15 | lipoprotein, leucine rich repeat protein [Psychroflexus torquis ATCC 700755] |
| Swissprot | tr|Q9XGM3|RPS4C_ARATH | 3.00E-31 | Disease resistance protein RPS4 {ECO:0000303|PubMed:10571887} |
| trEMBL | tr|A0A075D396|A0A075D396_CICAR | 0 | NBS-LRR protein {ECO:0000313|EMBL:AHG28976.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01663 | 3878 | 7106 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001663s00027475.1 | PF00931.17 | NB-ARC | 15 | 76 | 2.40E-08 |
| Glyur001663s00027475.1 | PF00560.28 | LRR_1 | 179 | 200 | 0.037 |
| Glyur001663s00027475.1 | PF00560.28 | LRR_1 | 319 | 341 | 0.52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.056 |
| SRR1783600 | control | 0.040 |
| SRR1783602 | moderate drought stress | 0.020 |
| SRR1811619 | moderate drought stress | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.055 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.055 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.037 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.056 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.737 |
| SRR2868004 | Drought Stress (root) | 8.571 |
| SRR2967015 | Control (root) | 5.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.069 |
| SRR9715740 | Leaf | 0.049 |
| SRR9715741 | Leaf | 0.067 |
| SRR9715739 | Root | 0.096 |
| SRR9715742 | Root | 0.152 |
| SRR9715743 | Root | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.171 |
| SRR8749028 | MeJA induced 9h | 25.657 |
| SRR8749029 | MeJA induced 9h | 6.631 |
| SRR8749030 | Uninduced | 67.645 |
| SRR8749031 | Uninduced | 8.484 |
| SRR8749032 | Uninduced | 10.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.402 |
| SRR8400027 | Control - Root | 1.098 |