Gene detail information of Glyur001661s00033897 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68730.1 | 6.00E-34 | Zim17-type zinc finger protein |
| NR | KEH29577.1 | 2.59E-74 | DNL zinc finger protein [Medicago truncatula] |
| trEMBL | tr|A0A072UIS2|A0A072UIS2_MEDTR | 1.00E-74 | DNL zinc finger protein {ECO:0000313|EMBL:KEH29577.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01661 | 32476 | 36604 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001661s00033897.1 | PF05180.7 | zf-DNL | 96 | 154 | 4.00E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.430 |
| SRR1783600 | control | 12.029 |
| SRR1783602 | moderate drought stress | 5.181 |
| SRR1811619 | moderate drought stress | 4.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.395 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.080 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.338 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.139 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.845 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.289 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.697 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.158 |
| SRR2868004 | Drought Stress (root) | 2.896 |
| SRR2967015 | Control (root) | 2.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.630 |
| SRR9715740 | Leaf | 6.831 |
| SRR9715741 | Leaf | 9.300 |
| SRR9715739 | Root | 0.293 |
| SRR9715742 | Root | 2.510 |
| SRR9715743 | Root | 1.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.825 |
| SRR8749028 | MeJA induced 9h | 3.155 |
| SRR8749029 | MeJA induced 9h | 4.263 |
| SRR8749030 | Uninduced | 1.639 |
| SRR8749031 | Uninduced | 1.302 |
| SRR8749032 | Uninduced | 0.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.598 |
| SRR8400027 | Control - Root | 5.469 |