Gene detail information of Glyur001661s00033891 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13920.1 | 3.00E-06 | GRF zinc finger / Zinc knuckle protein |
| NR | KDO63899.1 | 1.90E-07 | hypothetical protein CISIN_1g038960mg [Citrus sinensis] |
| trEMBL | tr|A0A067F933|A0A067F933_CITSI | 7.00E-08 | Uncharacterized protein {ECO:0000313|EMBL:KDO63899.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01661 | 4392 | 5700 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001661s00033891.1 | PF06839.7 | zf-GRF | 21 | 57 | 5.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.534 |
| SRR1783600 | control | 21.825 |
| SRR1783602 | moderate drought stress | 26.490 |
| SRR1811619 | moderate drought stress | 25.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 55.193 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.459 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 77.228 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 78.653 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.970 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.588 |
| SRR2868004 | Drought Stress (root) | 0.910 |
| SRR2967015 | Control (root) | 1.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.807 |
| SRR9715740 | Leaf | 7.880 |
| SRR9715741 | Leaf | 12.433 |
| SRR9715739 | Root | 2.111 |
| SRR9715742 | Root | 8.512 |
| SRR9715743 | Root | 7.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.296 |
| SRR8400027 | Control - Root | 4.768 |