Gene detail

Gene detail information of Glyur001657s00042401

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12320.1	4.00E-48	ankyrin repeat family protein
NR	AFK40970.1	3.80E-93	unknown [Lotus japonicus]
COG	YP_001958455.1	2.00E-20	hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9SAR5\|AKR2_ARATH	6.00E-17	Ankyrin repeat domain-containing protein 2
trEMBL	tr\|I3SL28\|I3SL28_LOTJA	1.00E-93	Uncharacterized protein {ECO:0000313\|EMBL:AFK40970.1}

Sequence

Transcript Sequence

>Glyur001657s00042401.1
GAGCCTTACTCTTTGTTTGTGAGCCCTAGTGTGCCATTCTTCTTCGTTCTCAGCCATACTCAAATAGCTATACTACTGCATCTTCGTTCTCAGCCAGAGGTGAGCCGTTCGTACCTCCGTTCGTCGCCGTTCAACACTGTGCTCCGCCGAGCTTCGTTTTGTAANTCTGCCTTCTTCGTCTCCGTTTCGTTTCTCTGCCATTGTTAGGGTTCCCTACCTCTTCTCCTAACTCTCGTATTCTTCTCTGTNTTGGTGCTTCTCTTTCTAGGTTGCAGCTTTAAAGGAGGACAGTTTCCCCAAAGTCTGTTGAAGAGATTTATACTTTNCGTTGTGCTCTGTTTGTCTGTGGAAGAGATTTATTCTTTGCATACATTCAAGGAGCCTTTGTTTGGAGTTACAAGGCATTGGTTACTGAGGCAGTTTTTTTTTTTAAGGAAAAAACCAAAAACCAACAAGACTAAAGGAACGCCACCGTTTTGCTCCTTGGTTTCTCGGAGCGGAAAAGGGTGGTGAGGTAACAAGGGCAAATGGGTGCAGCTGAGGCGAACATAAAACTGCAGGATACGTCTGAANCGACGCCGGAGAACATCGAAGCCTTGCTTGAGTCTGCAAGATATGATGACATGGATGATGTTGTGAGCTTAGCATCCAGTGGTGTTCCTCTTGATTCCAAGGATGACCAGGGCAGAACAGCTCTTCATATGGCTGCGGCAAACGGACATATTGATATTGTGGATTATTTAATCAGTAAAGGAGTGGACCTTAATTCAGCAAATGAGGAAAAGAATACACCTCTTCATTGGGCGTGTCTCAATGGGCATGTTGAGGTTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGCGTTTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCCGTGAGTCAGAGTAAGCTTGAAGTGATGGATGCAATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGAGCTTTGGTTTCTTCATAGGAAAAGTTAAAAGTTTATGCTACTCTATGTAATATGGAAATTTGGTCGTAGTTATACATGTCTTCCTATGTTTTACTTCATTAGTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01657	54351	59053	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001657s00042401.1	PF13857.1	Ank_5	72	126	1.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.787
SRR1783600	control	10.205
SRR1783602	moderate drought stress	27.859
SRR1811619	moderate drought stress	28.155

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.778
DRR006520	Root Summer glycyrrhizin high producing strain	22.307
DRR006521	Root Winter glycyrrhizin high producing strain	16.259
DRR006522	Root Winter glycyrrhizin high producing strain	15.852
DRR006523	Root Summer glycyrrhizin low producing strain	17.235
DRR006524	Root Summer glycyrrhizin low producing strain	17.047
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.947
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.713

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.655
SRR2868004	Drought Stress (root)	21.994
SRR2967015	Control (root)	25.169

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.508
SRR9715740	Leaf	14.273
SRR9715741	Leaf	11.149
SRR9715739	Root	10.972
SRR9715742	Root	11.903
SRR9715743	Root	12.361

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.129
SRR8749028	MeJA induced 9h	19.614
SRR8749029	MeJA induced 9h	38.197
SRR8749030	Uninduced	9.103
SRR8749031	Uninduced	5.405
SRR8749032	Uninduced	7.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.621
SRR8400027	Control - Root	24.837