Gene detail information of Glyur001654s00037116 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57430.1 | 6.00E-136 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_003528600.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q7Y211|PP285_ARATH | 9.00E-159 | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic (Precursor) |
| trEMBL | tr|K7L3G9|K7L3G9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G36270.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01654 | 27983 | 30436 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001654s00037116.1 | PF13041.1 | PPR_2 | 112 | 156 | 8.10E-08 |
| Glyur001654s00037116.1 | PF01535.15 | PPR | 184 | 209 | 0.0024 |
| Glyur001654s00037116.1 | PF01535.15 | PPR | 212 | 238 | 1.20E-05 |
| Glyur001654s00037116.1 | PF01535.15 | PPR | 284 | 307 | 0.052 |
| Glyur001654s00037116.1 | PF01535.15 | PPR | 312 | 341 | 0.0015 |
| Glyur001654s00037116.1 | PF01535.15 | PPR | 385 | 412 | 0.054 |
| Glyur001654s00037116.1 | PF01535.15 | PPR | 413 | 442 | 0.0057 |
| Glyur001654s00037116.1 | PF13041.1 | PPR_2 | 510 | 558 | 3.40E-08 |
| Glyur001654s00037116.1 | PF13812.1 | PPR_3 | 586 | 608 | 0.31 |
| Glyur001654s00037116.1 | PF13041.1 | PPR_2 | 611 | 659 | 3.30E-09 |
| Glyur001654s00037116.1 | PF01535.15 | PPR | 686 | 706 | 1 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.191 |
| SRR1783600 | control | 16.147 |
| SRR1783602 | moderate drought stress | 22.377 |
| SRR1811619 | moderate drought stress | 22.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.674 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.100 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.551 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.337 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.861 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.869 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.923 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.854 |
| SRR2868004 | Drought Stress (root) | 20.339 |
| SRR2967015 | Control (root) | 18.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.525 |
| SRR9715740 | Leaf | 8.533 |
| SRR9715741 | Leaf | 9.509 |
| SRR9715739 | Root | 19.901 |
| SRR9715742 | Root | 35.311 |
| SRR9715743 | Root | 31.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.619 |
| SRR8749028 | MeJA induced 9h | 70.208 |
| SRR8749029 | MeJA induced 9h | 67.018 |
| SRR8749030 | Uninduced | 41.193 |
| SRR8749031 | Uninduced | 40.497 |
| SRR8749032 | Uninduced | 22.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.328 |
| SRR8400027 | Control - Root | 33.379 |