Gene detail information of Glyur001654s00037114 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05642.1 | 4.00E-05 | Nucleic acid-binding, OB-fold-like protein |
| NR | XP_003542321.2 | 3.14E-27 | PREDICTED: replication protein A 70 kDa DNA-binding subunit E-like isoform X1 [Glycine max] |
| trEMBL | tr|K7LYS6|K7LYS6_SOYBN | 5.00E-28 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G14336.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01654 | 15159 | 16032 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001654s00037114.1 | PF08646.5 | Rep_fac-A_C | 14 | 135 | 2.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.264 |
| SRR1783600 | control | 0.209 |
| SRR1783602 | moderate drought stress | 0.644 |
| SRR1811619 | moderate drought stress | 0.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.827 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.479 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.260 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.473 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.135 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.198 |
| SRR9715740 | Leaf | 1.043 |
| SRR9715741 | Leaf | 3.695 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 5.387 |
| SRR9715743 | Root | 3.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.751 |
| SRR8749028 | MeJA induced 9h | 0.276 |
| SRR8749029 | MeJA induced 9h | 0.177 |
| SRR8749030 | Uninduced | 0.095 |
| SRR8749031 | Uninduced | 0.292 |
| SRR8749032 | Uninduced | 0.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.924 |
| SRR8400027 | Control - Root | 2.475 |