Gene detail

Gene detail information of Glyur001653s00028826.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66240.1	1.00E-157	Transducin/WD40 repeat-like superfamily protein
NR	XP_003550243.1	0	PREDICTED: WD repeat-containing protein 82-B-like isoform X1 [Glycine max]
COG	YP_003167824.1	2.00E-21	WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
Swissprot	tr\|P93107\|PF20_CHLRE	9.00E-12	Flagellar WD repeat-containing protein Pf20
trEMBL	tr\|I1MX41\|I1MX41_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G33900.8}

Sequence

Transcript Sequence

>Glyur001653s00028826.1
AAAAAAAATAGTTCTGCAGGTTGGTATTCTCTNACTTTTCCAGGCTTGTGAGGCTTTGAGCTGTGGGATTAAGGTTTCCTCTCCAATNTACGGTGACACCCAAATTCCATAAAATCTTCCTCAGCGTGTCAGATACCAAGGCGAAATTTGCCTCTAAAATGGGTGGGACACAAGTGGAGAGAGAAGAGAAGGTGTCTTTGGAGCTGAGTGAAGAAATTCTTCAGAGTATGGAAGTAGGAATGGCCTTCAAAGACTACAATGGTAAGATTAGTTCGTTGGATTTTCACAGGGCATCCAGTTATCTAGTGACTGCAAGTGATGATGAATCCATTCGTCTATATGATGTTACCGCTGGAACATGTTTGAAGACAATTAACAGCAAGAAGTATGGGGTTGACCTGGTATGCTTCACATCTCATCCTACAACTGTCATTTACTCTTCTAAGAATGGTTGGGATGAATCTTTGCGGCTTCTATCATTGCATGATAACAAGTACTTGAGATATTTCAAAGGTCATCATGACAGGGTTGTCTCGCTTAGCTTGTGCTCACGAAAAGACTGTTTTATATCTGGATCTTTAGATCGAACTGTTTTACTATGGGATCAAAGGGCTGAGAAGTGCCAGGGACTATTACGCGTACAAGGAAGGCCAGCTATATCATATGATGATCAAGGGCTTGTCTTTGCAATTGCCTTTGGAGGATATATAAGAATGTTTGATGCACGCAAGTATGAAAAGGGTCCCTTTGAGATATTTTCTGTTGGGGGAGATATTTCTGATGCAAACGTTGTGAAGTTCAGNAATGATGGTAGACTCATGCTTTTAACAACTGCAGATGGGCATATTCATGTACTTGACTCATTTCGTGGTACACTTTTATCCACATATAATGTCACGCCTATCTCATGCAACTCCACATTAGAAGCTTCTTTCAGCCCNGAGGGAATGTTTGTAATATCAGGCTCNGGGGATGGAAGCATCCATGCGTGGAGTGTTCGAAGTGGCAAAGAAGTTGCAAGTTGGAGGAGTGCGACTTCTGATACTGGACCTCCTGTTATAAAATGGGCTCCTGGAAGTCTTATGTTTGCAACTGGATCGTCTGAGTTATCATTTTGGGTTCCAGATTTGTCTAAACTGGGTGCTTATGTTGGAAGGAAGTAGAAACTCTACATGGTAAAGCTATTGTTTGCCATCAACCCACTGAAACATTATATTTTGTTAATACTACTGACAAACTTTGCTGTGGTTTGTAAATATTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01653	56464	60359	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001653s00028826.1	PF00400.27	WD40	31	62	5.20E-05
Glyur001653s00028826.1	PF00400.27	WD40	113	149	5.20E-05
Glyur001653s00028826.1	PF00400.27	WD40	258	279	0.00098

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.366
SRR1783600	control	7.476
SRR1783602	moderate drought stress	9.551
SRR1811619	moderate drought stress	9.807

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.287
DRR006520	Root Summer glycyrrhizin high producing strain	16.891
DRR006521	Root Winter glycyrrhizin high producing strain	33.056
DRR006522	Root Winter glycyrrhizin high producing strain	32.490
DRR006523	Root Summer glycyrrhizin low producing strain	18.085
DRR006524	Root Summer glycyrrhizin low producing strain	18.728
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.825
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.215
SRR2868004	Drought Stress (root)	21.832
SRR2967015	Control (root)	24.208

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.431
SRR9715740	Leaf	14.325
SRR9715741	Leaf	14.593
SRR9715739	Root	7.652
SRR9715742	Root	9.194
SRR9715743	Root	9.447

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.289
SRR8749028	MeJA induced 9h	18.920
SRR8749029	MeJA induced 9h	15.907
SRR8749030	Uninduced	15.294
SRR8749031	Uninduced	9.405
SRR8749032	Uninduced	15.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.927
SRR8400027	Control - Root	19.502