Gene detail

Gene detail information of Glyur001653s00028821

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38020.1	9.00E-100	tRNA/rRNA methyltransferase (SpoU) family protein
NR	AET03360.2	0	tRNA/rRNA methyltransferase SpoU family protein [Medicago truncatula]
COG	YP_007140.1	2.00E-52	hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila UWE25]
trEMBL	tr\|G7LIJ4\|G7LIJ4_MEDTR	0	tRNA/rRNA methyltransferase SpoU family protein {ECO:0000313\|EMBL:AET03360.2}

Sequence

Transcript Sequence

>Glyur001653s00028821.1
CAGGTAGGCAGGTAGNAGAGGAAGAAGGCAAAAACAAACCAAACAGAAATGCTATGCAGCAGCAGCAGCAACTCCCACCGTGCGACCGTTTTCTATCCTCAAACACTGAAAATTCGGTGTTTTCAGCCCAGGCTTTCAGTTACTCCACCACAACAACAGTTACAACACACCCATCCACAAGAGCTACGAATCTCTCACGATGATGTAAAACCAAAACTGATAACCAGTGCTTCAAACCCATTCGTAAAGCACTGCCTCAAGCTCCGCAACAACTCTTCCTATCGCCGCTCTCATGGTTCTGTTCTTGTCGTTGGTTCTACACCTATCAGAGAAATCTACAGGTTTCAAGAGTCATCACATGATGAAAGTGTTACAATGGATTGTTTAATTCTTCCTGATGATAAAGCTGAAATTCCCAATGGGTTGGATAAATCCACTGCTTCTATTGTACGTGTGAGCTCGATAGTGATGAGAAAGATCTCAGGTCTGCAATCAACTGAGTCTATTGATGCAATTGCCCTTATGAAAATTCCTCCCAGTGTTTTCAATTTAGATGGAGATCAAAAGCACTGCCAGAAGTGGTTTCCTTCTGCGCATCGGATTTTAGTCCTTGATGGAATTCAGGATCCTGGTAACCTTGGTACATTGCTCAGATCAGCTGTGGCCTTCAGATGGGATGGGGTTTTTCTTCTTCCTGGCTGCTGTGATCCATTCAACGAGAAAGCTCTCCGAGCTAGCCGAGGCGCCTCCTTTCAGCTCCCAGTAGTTTCTGGAAGTTGGAATCATCTTGAGTCTCTCAGAGAAGAATTCCAAATGAAGTTGCTAGCTGGGCATCCAGAGCATGAAGGGTTGGTCAAGCCAGTTTGTTCACTTTCTCCAAGCTTCTGTGATTCCATATCAGATACACCATTGTGCTTGGTTTTGGGGAGTGAAGGAAGTGGCCTCTCAGAAAAATCCCTGCAGGAGTGTGAGCTTGTGAGCATTGCAATGGCTGGTGAATATGAGTCACTTAATGTTTCAGTTGCTGGTGGAATTTTCTTGTATATGCTACAGCCAAAGAACAAATGATTTTTTCAAATTCTATATTAGATTAAATATATTTTTAGTCCTGTAAATAAAAAAAAATGAGGATTGTATACTCATTGTTTAAGTGTGCAGAAGAATTAAGTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01653	26996	30103	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

molecular_function

GO:0003723 RNA binding

GO:0008173 RNA methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001653s00028821.1	PF00588.14	SpoU_methylase	185	332	5.20E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.976
SRR1783600	control	6.986
SRR1783602	moderate drought stress	9.646
SRR1811619	moderate drought stress	9.572

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.500
DRR006520	Root Summer glycyrrhizin high producing strain	6.213
DRR006521	Root Winter glycyrrhizin high producing strain	8.361
DRR006522	Root Winter glycyrrhizin high producing strain	8.335
DRR006523	Root Summer glycyrrhizin low producing strain	8.017
DRR006524	Root Summer glycyrrhizin low producing strain	8.145
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.339
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.417

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.301
SRR2868004	Drought Stress (root)	9.092
SRR2967015	Control (root)	8.731

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.362
SRR9715740	Leaf	12.191
SRR9715741	Leaf	7.902
SRR9715739	Root	3.950
SRR9715742	Root	5.572
SRR9715743	Root	3.693

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.029
SRR8749028	MeJA induced 9h	3.406
SRR8749029	MeJA induced 9h	2.545
SRR8749030	Uninduced	2.972
SRR8749031	Uninduced	0.936
SRR8749032	Uninduced	1.603

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.092
SRR8400027	Control - Root	10.940