Gene detail

Gene detail information of Glyur001653s00028818.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65590.1	5.00E-26	Dof-type zinc finger DNA-binding family protein
NR	XP_007158346.1	5.57E-101	hypothetical protein PHAVU_002G144900g [Phaseolus vulgaris]
Swissprot	tr\|Q9LSL6\|DOF57_ARATH	2.00E-53	Dof zinc finger protein DOF5.7
trEMBL	tr\|V7CM55\|V7CM55_PHAVU	2.00E-101	Uncharacterized protein {ECO:0000313\|EMBL:ESW30340.1}

Sequence

Transcript Sequence

>Glyur001653s00028818.1
ATGATGATGCCACCAGATAACATAACGAAGAAAGATCAAGAGATTATTAACCAAGGTAGCAAGATCAAAACAACAAGGCCAACACCAACACCACCACCAGAACAAGGAGTACTACTAAAGTGTCCACGATGCGATTCCCCTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAGCCAAGGCATTTCTGCAAAACATGCCGCAGGTACTGGACAAACGGTGGTGCCTTGAGGAATGTCCCAATTGGTGGTGGTTGCCGTACGAACCACAACAAGAAGAAGGTGAAGAAAACGTCGTCGTCTTCTTCAATTTCCTCGAGGCTCTCATGTGACTCTTCCTCCAAGGACTCTGCTTCCTCTTCTTCAGAACTCTCTGCAGGCCTCAGATTCTTCCATATCAATAATTCTTCTTCACCTTCATTGGAATTTCACCTTGGTGGGTTACCCTTAATCCCTTCAAGGCTTCACCAACAACAACCTTCATTTACCAACCAATTCTCTTCTTTTGGGGCCACAAGTGCTGCATCAAGTTTCCAACTTGATCCCTCTGGCGCTGACCCAGATTCATTGATTGGTCTAAACCACCCTTTTTCTTCTTCAACTGGAAGTGGATTGTTCAATAATGGTGCTGCAATAATCCAGGGCATGAATAACAGCTCCATGAACGTGAATAGTACTAGTAGTAGTGCCCTTGCTTCTTCGATTGAATCGTTGAGCTCAATGAACCAGGACTTGCACTGGAAACTGCAGCAGCAGAGGTTGGCAATGATGTTTACTGGTGGAGATAATAACAACAACCAGAAAGATAAAGATAGTTGCAGTACTGTTTCACTTCCTCAGGTTAATAAGCCACAACCCATTTTGTTTCAGAACCTTGAGATCTCGAAGCCAGAGATGTTTCAAGGTGGTGGTGATTCCAGAAAAGGTGAAGGACCAAGTGGGGATGCACCAATTGAATGGTTCTTTGGGACTCATCCTACAACTACTACTACTACTAGTAGTGTTGTGACTGTTGTCAATGGCCATGATGATAATGCTGCAAACAACAACTGGGGTAGTGGTGTCCATGCTTGGGGTGATGTGCAGCAACCATATAGTGTGTTGCCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01653	13706	14821	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001653s00028818.1	PF02701.10	zf-Dof	38	95	5.80E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.393
SRR1783600	control	0.334
SRR1783602	moderate drought stress	0.710
SRR1811619	moderate drought stress	0.587

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.097
DRR006520	Root Summer glycyrrhizin high producing strain	0.096
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.396
DRR006524	Root Summer glycyrrhizin low producing strain	0.481
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.167
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.166

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.065
SRR2868004	Drought Stress (root)	0.345
SRR2967015	Control (root)	0.288

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.029
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.064
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.136
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.022
SRR8400027	Control - Root	0.049