Gene detail

Gene detail information of Glyur001652s00038196

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12900.1	2.00E-167	glyceraldehyde 3-phosphate dehydrogenase A subunit 2
NR	AEH04452.1	0	glyceraldehyde-3-phosphate dehydrogenase [Arachis hypogaea]
COG	YP_007053884.1	1.00E-163	glyceraldehyde 3-phosphate dehydrogenase (NADP+) [Rivularia sp. PCC 7116]
Swissprot	tr\|P12858\|G3PA_PEA	0	Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Precursor)
trEMBL	tr\|F8UX79\|F8UX79_ARAHY	0	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256\|RuleBase:RU361160}

Sequence

Transcript Sequence

>Glyur001652s00038196.1
CTTGTTAATTTTGCTTGCTCCACAGTCTACTAGTCTCTCTACTGCTCCAAACTTGCTCCATCAAAAAAACAATTTACTCTCTCCATTGTTGGCTGAATATAATGGCTTCGGCTACTTTCTCTGTAGCCAAACCAGCTCTTCAGGCAAATGGGAAGGGCTTCTCTGAGTTTTGTGGTCTTCGGAACTCATCATCAGGTTACCTTCCATTTCCTTCTAGAAAAGCTNCTGAGGACTTTCATTCAGTTGGAAGCAGTGGATTAGGATCAAATGGGAAAGGAGTAGTGTTGGAAGCAAAACTGAAGGTGGCGATAAACGGGTTTGGAAGGATAGGGAGGAACTTCTTGAGGTGCTGGCAGGGTCGCAAGGAGTCACCGTTGGATGTGATTGCGATAAACGACACTGGAGGTGTGAAACAAGCGTCACACCTTCTCAAATATGACTCCACACTNGGAATCTTTGATGCTGATGTGAAGCCCGTTGGTGATGATGCCATCTCCGTCGATGGGAAAGTCATCAAGGTCGTCTCTGATCGTAACCCTGCTAAACTCCCCTGGAAGGAGTTGGGGATAGACTTGGTGATAGAAGGAACAGGGGTATTTGTGGACAGAGAAGGAGCAGGGAANCACATTGAGGCAGGGGCAAAGAAAGTGCTCATAACAGCACCTGGCAAAGGAGACATCCCAACCTATGTGGTTGGTGTCAATGATGATGCTTACAGCCCCCATGAACCCATCATCAGCAATGCCTCTTGCACCACTAATTGCCTTGCACCCTTTGTCAAAGTCCTTGATCAGAAATTCGGTATAATCAAGGGCACCATGACAACAACTCACTCCTACACNGGCGACCAACGGCTTCTCGACGCCAGCCACCGCGACCTGAGGCGTGCTCGGGCCGCNGCACTCAACATAGTCCCAACCTCAACAGGGGCAGCAAAGGCAGTGGCCCTAGTCCTGCCAACACTAAAGGGCAAGCTCAACGGCATTGCCCTCCGTGTCCCAACACCGAACGTNTCGGTGGTGGACCTTGTTGTTCAGGTCTCAAAGAAGACCTTCGCTGAGGAAGTGAATGCTGCTTTTAGAGAGAGTGCAGATAATGAGCTCAAAGGTATCCTCTCTGTGTGTGATGAGCCTTTGGTCTCTGTTGACTTCAGGTGCAGTGATGTGTCATCAACTGTTGACTCATCTTTGACTATGGTCATGGGTGATGATATGGTCAAGGTGATTGCTTGGTATGATAATGAGTGGGGTTACTCACAAAGGGTTGTTGATTTGGCTGATATTGTTGCCAACAAATGGAAGTGATCCAGCCACATGCCCCAAAAAGGCAAAAACCCAATTTTTAATTATCTACCTACCATATTGCTTTTGTAATAATTTTTGTCTAATTACAACATTTCTTGAGTTTTAACTTAATTTCATCTTTCTTACTGAANTTTGCAATCGAGAAATAGAACCATCGGTTTTGTGCTGCTTCTCATTGTGCAATAATTTTTTTTTACCTTGAAATGGGAATGTAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01652	25399	29778	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05298	GAPA	EC:1.2.1.13	Carbon metabolism	map01200
			Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

biological_process

GO:0006006 glucose metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

GO:0050661 NADP binding

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001652s00038196.1	PF00044.19	Gp_dh_N	67	217	3.60E-53
Glyur001652s00038196.1	PF02800.15	Gp_dh_C	222	378	5.90E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.202
SRR1783600	control	0.193
SRR1783602	moderate drought stress	0.175
SRR1811619	moderate drought stress	0.174

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.071
DRR006520	Root Summer glycyrrhizin high producing strain	0.070
DRR006521	Root Winter glycyrrhizin high producing strain	0.293
DRR006522	Root Winter glycyrrhizin high producing strain	0.285
DRR006523	Root Summer glycyrrhizin low producing strain	0.652
DRR006524	Root Summer glycyrrhizin low producing strain	0.579
DRR006525	Leaf Summer glycyrrhizin high producing strain	246.436
DRR006526	Leaf Summer glycyrrhizin high producing strain	246.090

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.735
SRR2868004	Drought Stress (root)	6.387
SRR2967015	Control (root)	1.592

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	315.438
SRR9715740	Leaf	367.520
SRR9715741	Leaf	280.431
SRR9715739	Root	0.098
SRR9715742	Root	0.794
SRR9715743	Root	0.563

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.220
SRR8749028	MeJA induced 9h	0.274
SRR8749029	MeJA induced 9h	0.040
SRR8749030	Uninduced	0.166
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.037

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.520
SRR8400027	Control - Root	0.774