Gene detail

Gene detail information of Glyur001650s00035483

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16380.1	1.00E-126	Cation/hydrogen exchanger family protein
NR	XP_007210469.1	0	hypothetical protein PRUPE_ppa020557m1g, partial [Prunus persica]
COG	NP_810696.1	1.00E-22	cation/H+ antiporter [Bacteroides thetaiotaomicron VPI-5482]
Swissprot	tr\|Q9SA37\|CHX1_ARATH	7.00E-156	Cation/H(+) antiporter 1
trEMBL	tr\|M5WQS5\|M5WQS5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11668.1} (Fragment)

Sequence

Transcript Sequence

>Glyur001650s00035483.1
ATGGATGCCACCCACTCCATGTTTTGTAACGATGATTTGGTTAACCCTCTAAGCTCAATGGGCATGCAAGTGTCCTGCATTCTTGTTGTGTCACACATCTTCAACGTTGTGCTTAGGACTCTGGGTCAACCTGGACCCCTTGCACAAATCCTGGCTGGGTTGGTACTAGGTCCAATGTCTCATATTTCTTATATAAAAAAGACATTCTTTCCTGCCAGTTCCATAAACTACTATGAAGTTGTGAGCTTTTTCTGCCGCATACATTTCATGTTTCTATTTGGGTTAGAGATGAACATTCACTACACATTGCGCCACCTACGTTTGGTCAGCTTGGTAGCATGTGGGGGTGCACTAATGGGTGGCATTTTTGGCCTATCTGTCTCCTTTTATTTGTGGGACCAGTTTGAGTTTCCTGCCAAAGACCCTGCCAAGCCTTACTTCTGCATGATCATCATGCTGGTCCTGTCATACACAAGTTCCCCTATGGTGATCCGTTTGGCGGCCGAACTTAGGTTCGCTGCATCGGATGTGGGCCGGATTGCGGTGTCTTCTTCGCTCATCACNGAAATGAGCTGCCTGTTGTTCTTCAATGCGATGGTTAACTTCAACAAGAAACGTGGCATTCTCCATGCTTTTTCATGCCTTCTTGTTACTACTCTTGTGGTTCTTATAAATAGGTACTTAGCTGTTTGGTTAAATGCAAGACATAGGAACCAAAAGTACCTCAAGGCTCCTGAGTTGTTGCTCATCATGTTCCTGCTTGTAACTAGCTCAATGATTACAGAAATCTTGGGTTACAATAGTATTATTAATTGCTTCATCATTGGCTTGTTGTTTCCTAAGGAAGGCAAAACAGCTAGAACATTTTTGCACAAACTTGGTTACTCTATTTACAACTTTGTGCTTCCAGTATACTTTGGTTACTTGGGGTTACAATGTGACTTCATAAATACTTTTAATTCAGATGCTTATAATGTGTTGATGGTAGCAATAGTGTTTAACACAATAATATCAGGGGTAATTGTGGCTTTTCTAGCACGGGGGGAAGAGAAAATGTTTGCAAACAACTACACCGCAATCGAACCGCAACAAATGGAGGACGAGCTTCGAATCCTAGCTTGTGTATATGACCCTCGTCAAGTATCTGCGATACTTGCCACAATACTAGCAATACAAGGCTCAAGAACATCACCATCCACAACCTTTCTAATACACCTAATTGAGCTTGTGAAGAAGATCAAGTCCAACTTGTTATTCCATGAAAAGGAAAATGCTGACCTTAGTGATGATGATGACTATGGTGGCAACGATGTGGTTGAAATTAACAATGCTTTAGATGCCTTCACTACAGACACAAAGATTTTGGTCCACCAAAGAAGGGCAGTGTCTTCTTTCCCAAGTTTGTATGAAGATGTGTGCAATGAAGCAGAAGATCTTCAAGTGTCCATTATTCTACTTCCCTTCCACAAGCATCAGCGCATCGACGGAAAACTGGAAAGCGGGAAGGAAGGTATAAGGATTACAAATCAGAAGGTTCTTAGGCATGCCCCTTGTTCTGTTGGTGTCATTATAGAAAGAGGCCTTGCTAGGGTCCCTGGTTTCTCACAGATAGTTGCATCTGAAGCCATACAGAGTGTTGCAACCCTTTTCTTCGGAGGACCGGATGATCGNGAGGCTATCGCATGGAGCCTTCGCATATCGAAAAGCCCTCGCGTTAACTTGACAATCATCAGATTCCTACTGGCTTCTTCTTCATCATCACAAAATGAGCAACAGATTGAGAGTGGACAATCTGAGGAGAAAGAGATTTTGATGTCATTGTCTGGGGAGGAGACTGTGAATGAGGTTGACAATACCTTTATGGTTGATTTCTATAATAGGTATGTCACTTCAGGTCAAATTGGGTATGTGGAAAAGTTTGTGAATGATGGAGCACAAACAGTGGAGTCTTTGAAAGAGATAGGGGACATGTACTCTTTGTTTGTAGTAGGGAAAGGTGGTAGAGGAAATAGTTCATTAACAATAGGTATGAGTGATTGGGAGGAGTGTCCAGAACTTGGAACAGTTGGTGATGTCTTGGCTTCTTCAGACTTTGATATTCATGGCTCAGTTTTGGTCATTCAACAACATAGAGATGCCAAGAAAGGCCTATTGCACGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01650	39955	43648	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0006813 potassium ion transport

GO:0006814 sodium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005451 monovalent cation:proton antiporter activity

GO:0015299 solute:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001650s00035483.1	PF00999.16	Na_H_Exchanger	26	345	6.10E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.831
SRR1783600	control	3.731
SRR1783602	moderate drought stress	2.242
SRR1811619	moderate drought stress	2.229

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.270
DRR006520	Root Summer glycyrrhizin high producing strain	1.512
DRR006521	Root Winter glycyrrhizin high producing strain	0.291
DRR006522	Root Winter glycyrrhizin high producing strain	0.302
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.043
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.030
SRR2868004	Drought Stress (root)	0.847
SRR2967015	Control (root)	0.706

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.247
SRR9715740	Leaf	0.189
SRR9715741	Leaf	0.056
SRR9715739	Root	0.124
SRR9715742	Root	0.840
SRR9715743	Root	1.250

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.458
SRR8749028	MeJA induced 9h	1.301
SRR8749029	MeJA induced 9h	1.224
SRR8749030	Uninduced	0.670
SRR8749031	Uninduced	0.395
SRR8749032	Uninduced	0.509

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.347
SRR8400027	Control - Root	3.623