Gene detail

Gene detail information of Glyur001650s00035482

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22170.2	7.00E-40	far-red elongated hypocotyls 3
NR	KHN40913.1	1.06E-102	Protein FAR-RED ELONGATED HYPOCOTYL 3 [Glycine soja]
Swissprot	tr\|Q9LIE5\|FHY3_ARATH	1.00E-45	Protein FAR-RED ELONGATED HYPOCOTYL 3
trEMBL	tr\|K7LB16\|K7LB16_SOYBN	2.00E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G00346.1}

Sequence

Transcript Sequence

>Glyur001650s00035482.1
ATGGGGATAACAACAACAGAGCTAGGTCAGCAATCTCGAGAAGAAGAAGAAGAAAACGGTTTTCACTTCGTTGTAAACGACAAGGAGGAGAATGCAGAGTTCTTCAATTCAAAGGAAGAAGCATTCTCCTACTACAAGGACTACGCCAAATCGTTGGGATTCGCAGCCATCATAAAAGCTAGCCGTCGATCTCGAATCTCCGGCAACTTCATCGACGCAAAATTCGCGTGCACCAAATACGGAAACANGAAACCGCCACAACAACAACAACAGAAACGGGGCAGAACGAACCTCTCTTGGGCCAAAACCGATTGCAAGGCCTGCATGCATGTCAAGAGAAGATACGACAGTAGATGGATCATCTCCAATTTCATCAAGGATCATAACCACCAACTCTTCCCTAATAACAACAACAACAACACAGACTTAGCTGTTGCCTGTCATCCAAGAAAAGAAAGTGAGGATGGGCCAACAAAAGCGTTCAGGGTTCAAGATTTTGTAGGCAATCAAAATTTTACTGTCATGTGGAATGAATTTACCTCTGAGACATTGTGTTCCTGCTATTCATTTGAATTGAATGGCTTTCTTTGTAGGCATGTAATGATTGTGTTGCAAATTTCTGGTGTACATAACATCCCGTCTCAGTATATATTGAAACGTTGGACCAAAGATGCCAAGAATAGACAAACAGCTAGTGATCTGTCAGATGTGGTTGACTCTAGGGACAAGCGCTATAACAATCTTTGTCAACTAGCCTTTGAACTGGGTGATAGAGGGTCTTTGTCACAAGAGAGTTACATTGTTGCTGTAAATGCATTGGAAGAATCTTTGAGAAAGTGTGAGAGCCTGATTGATTCTGTTCAGAGAGTCACAGAACCAAACTCACCAAATTTTGGTTCTCAAGAGGTGAATCTGAGTAGCAGTGCTAGTCATACAAACAAAAAGAACAGTACTTCTAAGAAAAGGCAGGTACGACCAGAACCAGAGATCATTGCTACAGGAATCAATTCTAGCTGGCAGCAAATGATTCATCAGGAAGATACTGATTATGATATTACATCACAGAAGAATATCTTATGGTTTGAAAACCCCAATACACGAGCTGCTGGCCTTGATTGTTCTTATGAATCACAGCTTAGCATTCAAGAGATGAATCAGCTGAATTCAAGAGCTCAGAACCTGGATGGCTATTTTGCTACTCAACAAATTGGTTCAGGAACGGACCATCCTAATGGAGGATCTGTACAACTGCATGGGATGGGACTAAACGTAAAACAACTAAATTCAAGGCACCCCGATCTCAATATTTTGGTTTATAATAGGCTGACATAGTGAGTTATATATATCAGCATGTATATGTTTCAGCTAGTTCAATGTATATGTTTATTAGGAGTCTTACAATCAAAAGAAATATATAAAATTGATTAGAAATCAAATAGTACCAAGCGTTATTTGATTTTGAAAGCCTAGATTGATTCCCGCTATTTTGGTAAATGAAGAAGGACTTTCGTTTCTGAACTTGTGGAGTGCATCATCAAGCAACACGTATCATAATTCTAGCATTTAGCCCTTCTATATGCATTGAAGAAGCTTAGTTCTTGTAATAACTATTTGTTACATTTCCTCGATAAAAAGAGACCAACTGCTTGTTGCAGGAACTTACCTCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01650	20628	25168	-

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001650s00035482.1	PF03101.10	FAR1	44	134	3.70E-23
Glyur001650s00035482.1	PF04434.12	SWIM	182	205	1.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.471
SRR1783600	control	7.650
SRR1783602	moderate drought stress	9.756
SRR1811619	moderate drought stress	9.791

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.587
DRR006520	Root Summer glycyrrhizin high producing strain	6.493
DRR006521	Root Winter glycyrrhizin high producing strain	7.456
DRR006522	Root Winter glycyrrhizin high producing strain	7.547
DRR006523	Root Summer glycyrrhizin low producing strain	4.958
DRR006524	Root Summer glycyrrhizin low producing strain	5.235
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.127
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.065

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.226
SRR2868004	Drought Stress (root)	7.162
SRR2967015	Control (root)	7.540

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.370
SRR9715740	Leaf	3.914
SRR9715741	Leaf	3.116
SRR9715739	Root	0.756
SRR9715742	Root	3.457
SRR9715743	Root	3.870

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.574
SRR8749028	MeJA induced 9h	2.530
SRR8749029	MeJA induced 9h	2.044
SRR8749030	Uninduced	2.529
SRR8749031	Uninduced	2.972
SRR8749032	Uninduced	1.336

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.278
SRR8400027	Control - Root	8.669