Gene detail

Gene detail information of Glyur001650s00035480

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61510.1	3.00E-154	GroES-like zinc-binding alcohol dehydrogenase family protein
NR	XP_004515201.1	0	PREDICTED: quinone oxidoreductase 1-like [Cicer arietinum]
COG	YP_002298988.1	3.00E-133	quinone oxidoreductase [Rhodospirillum centenum SW]
trEMBL	tr\|I1LVH0\|I1LVH0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G36990.1}

Sequence

Transcript Sequence

>Glyur001650s00035480.1
TCCCTTTGCTATAAGAAACAATGAATCGAATCCAAATTGGGAAAAACCGATAAACAAATGTCACTGTTGAAGGTCTTTAAATTCCAGAACCTGCGTCACTGTCTACTACATACACCAACAACCCCTTCTCCATCTTCTTCATTCCCTTTGATCAGAGACAGAGTGAGAGTGAGAGGCATAGCAGCAGCACTAAGCACCAAAGCTTCGTTATCGTCNTCAGAGAAGACAGAAATGGTGAAAGCTATCAGAGTTCATGAACTGGGTGGTCCTCAGGTTCTGAAGTGGGAGGATGTGGAAATCGGAGAGCCTAAGGAAGGCGAGGTCCGTGTGAGGAACAAAGCCATTGGGGTCAACTTCATTGATGTCTACTTTCGCAGAGGAGTTTACAAAGTCCCTTCTTCACCCTTCACTCCAGGTATGGAGGCTGTTGGGATTGTGACTGCTGTGGGTGCTGGACCCACCGGTGTACAGGTTGGCGATATTGTAGGTTATGTAGGTCAACCGATGGGCTCATATGCTGAAGAGCAGATTCTTCCTGCAAATAAAGTAGTCCGTATCCCTCCCTCCATCGATCCAACTGTTGCAGCATCCATCTTGCTGAAGGGCATGACTGCGCAATATTTGCTCCGTAGGTGTTTCAAGGTTGAACGTGGTCACACAATTCTTGTCCATGCAGCAGCTGGTGGAGTTGGATCCCTATTGTGCCAGTGGGCAAATGCTCTTGGTGCAACTGTTATAGGAACTGTATCCAATAAAGAGAAAGCAGCTCAAGCCAAGGAGGATGGATGCCATCATGTTATCATATATAAAGAAGAGGATTTTGTGGCCCGCGTCAATGAAATCACATCTGGCAATGGAGTTGAAGTAGTCTATGATTCTGTGGGAAAGGATACCTTTGAGGGATCTTTGGCATGCTTGAAGCTTCGAGGCTACATGGTAAGTTTTGGGCAGTCATCTGGTGCACCTGATCCAGTTCCATTATCTTCCTTGGCTGCAAAATCCTTGTTCTTGACAAGGCCCACCTTGTTTCAATATGTTGTTACTCGTGATGAGCTATTGGAGGCTGCTGGAGAGTTGTTTGCTGTTGTTGCTTCTGGTATCTTGAAGGTTCGAGTTAATCATACTTATCCATTGTCTGAGGCAGCAAAAGCACATGAAGACTTGGAGAATCGCAAGACCTCTGGATCTGTTGTGTTGATACCTTAAAAGGGCTATATATCCAGCTGAATGTAGGTGTTTAAAACCAAAAAGTCCTTGTTTGGCCCCCATTGAAAGGAACTATTTTATTCACAATCAGTCACAGTACTTANATAATAATGATCATTCTGATATCATGGTCATGGCTTTGTATTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01650	14788	19100	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001650s00035480.1	PF08240.7	ADH_N	87	144	1.90E-10
Glyur001650s00035480.1	PF00107.21	ADH_zinc_N	210	325	2.30E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.256
SRR1783600	control	61.567
SRR1783602	moderate drought stress	46.361
SRR1811619	moderate drought stress	46.236

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.929
DRR006520	Root Summer glycyrrhizin high producing strain	61.164
DRR006521	Root Winter glycyrrhizin high producing strain	48.388
DRR006522	Root Winter glycyrrhizin high producing strain	47.764
DRR006523	Root Summer glycyrrhizin low producing strain	62.856
DRR006524	Root Summer glycyrrhizin low producing strain	62.077
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.839
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.872

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	88.746
SRR2868004	Drought Stress (root)	81.606
SRR2967015	Control (root)	65.653

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.949
SRR9715740	Leaf	21.520
SRR9715741	Leaf	19.641
SRR9715739	Root	53.602
SRR9715742	Root	57.699
SRR9715743	Root	55.983

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.786
SRR8749028	MeJA induced 9h	34.470
SRR8749029	MeJA induced 9h	50.091
SRR8749030	Uninduced	30.034
SRR8749031	Uninduced	17.491
SRR8749032	Uninduced	29.517

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	77.018
SRR8400027	Control - Root	79.199