Gene detail information of Glyur001647s00032316 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61850.3 | 7.00E-40 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_006582960.1 | 1.61E-81 | PREDICTED: Dof17 isoform X1 [Glycine max] |
| Swissprot | tr|Q43385|DOF37_ARATH | 2.00E-52 | Dof zinc finger protein DOF3.7 |
| trEMBL | tr|I1KHT6|I1KHT6_SOYBN | 6.00E-82 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G05950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01647 | 60808 | 61599 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001647s00032316.1 | PF02701.10 | zf-Dof | 25 | 84 | 3.90E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.878 |
| SRR1783600 | control | 40.016 |
| SRR1783602 | moderate drought stress | 43.389 |
| SRR1811619 | moderate drought stress | 43.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 62.249 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 60.589 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.472 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.174 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 93.597 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 95.944 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.062 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.032 |
| SRR2868004 | Drought Stress (root) | 67.349 |
| SRR2967015 | Control (root) | 78.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.998 |
| SRR9715740 | Leaf | 4.966 |
| SRR9715741 | Leaf | 5.983 |
| SRR9715739 | Root | 15.201 |
| SRR9715742 | Root | 24.112 |
| SRR9715743 | Root | 20.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 87.947 |
| SRR8749028 | MeJA induced 9h | 75.169 |
| SRR8749029 | MeJA induced 9h | 56.043 |
| SRR8749030 | Uninduced | 49.867 |
| SRR8749031 | Uninduced | 31.492 |
| SRR8749032 | Uninduced | 22.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 84.552 |
| SRR8400027 | Control - Root | 70.190 |