Gene detail information of Glyur001647s00032315 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01225.1 | 5.00E-96 | NC domain-containing protein-related |
| NR | KHN16420.1 | 2.14E-175 | hypothetical protein glysoja_033824 [Glycine soja] |
| trEMBL | tr|I1JS14|I1JS14_SOYBN | 2.00E-175 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G41990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01647 | 54625 | 57456 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001647s00032315.1 | PF04970.8 | LRAT | 10 | 161 | 2.70E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 52.933 |
| SRR1783600 | control | 54.205 |
| SRR1783602 | moderate drought stress | 40.224 |
| SRR1811619 | moderate drought stress | 40.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.737 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.680 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.953 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.932 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.275 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.531 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 57.020 |
| SRR2868004 | Drought Stress (root) | 56.987 |
| SRR2967015 | Control (root) | 58.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.401 |
| SRR9715740 | Leaf | 2.442 |
| SRR9715741 | Leaf | 3.308 |
| SRR9715739 | Root | 41.139 |
| SRR9715742 | Root | 37.016 |
| SRR9715743 | Root | 35.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.887 |
| SRR8749028 | MeJA induced 9h | 23.202 |
| SRR8749029 | MeJA induced 9h | 26.466 |
| SRR8749030 | Uninduced | 13.617 |
| SRR8749031 | Uninduced | 8.310 |
| SRR8749032 | Uninduced | 9.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 57.003 |
| SRR8400027 | Control - Root | 65.546 |