Gene detail information of Glyur001647s00032308 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00895.1 | 5.00E-17 | ATPase, F1 complex, OSCP/delta subunit protein |
| NR | XP_003626577.1 | 1.13E-101 | ATP synthase delta chain [Medicago truncatula] |
| Swissprot | tr|P32980|ATPD_TOBAC | 3.00E-15 | ATP synthase delta chain, chloroplastic (Precursor) |
| trEMBL | tr|G7L517|G7L517_MEDTR | 4.00E-102 | ATP synthase delta chain {ECO:0000313|EMBL:AES82795.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01647 | 26139 | 26867 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001647s00032308.1 | PF00213.13 | OSCP | 93 | 235 | 5.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.847 |
| SRR1783600 | control | 0.765 |
| SRR1783602 | moderate drought stress | 2.094 |
| SRR1811619 | moderate drought stress | 2.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.595 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.894 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.897 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.662 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.808 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.769 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 258.110 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 252.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.438 |
| SRR2868004 | Drought Stress (root) | 9.024 |
| SRR2967015 | Control (root) | 10.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 121.602 |
| SRR9715740 | Leaf | 181.789 |
| SRR9715741 | Leaf | 83.246 |
| SRR9715739 | Root | 3.893 |
| SRR9715742 | Root | 3.089 |
| SRR9715743 | Root | 2.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.620 |
| SRR8749028 | MeJA induced 9h | 1.408 |
| SRR8749029 | MeJA induced 9h | 1.939 |
| SRR8749030 | Uninduced | 2.140 |
| SRR8749031 | Uninduced | 0.877 |
| SRR8749032 | Uninduced | 2.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.016 |
| SRR8400027 | Control - Root | 3.032 |