Gene detail

Gene detail information of Glyur001647s00032307

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01200.1	1.00E-81	RAB GTPase homolog A3
NR	NP_001239700.1	1.12E-131	uncharacterized protein LOC100787725 [Glycine max]
COG	YP_008431664.1	6.00E-21	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q9LNK1\|RABA3_ARATH	4.00E-100	Ras-related protein RABA3
trEMBL	tr\|C6TEC8\|C6TEC8_SOYBN	4.00E-132	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G42030.1}

Sequence

Transcript Sequence

>Glyur001647s00032307.1
ATGAATCAGGAAATGAATGGGGTTGANGCTGAGAGGCTGCAAGAAAATGTGCATGACAAAATAGATTATGTGTTTAAGGTGGTGGTGATCGGGGACTCTGCTGTGGGAAAGACTCAGATACTCTCAAGGTTTGCAAAGAATGAGTTCTGCTTTGACTCAAAGTCCACCATTGGAGTTGAATTTCAGACTAGAACTGTCACTATTAATGGTAAAGTCATCAAAGCCCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCAGTGACAAGTGCATACTACAGAGGTGCATTAGGGGCCATGCTGGTGTACGATATAACTAAAAGGCAATCGTTTGATCATGTAGCCAGGTGGGTTGAGGAACTGCGTGCACACGCAGACAGCTCCATCGTGATCATGCTGATTGGGAACAAGGGTGATCTTGTGGACCAAAGAGAGGTACACACGGAAGATGCGGTGGAGTTCGCAGAGGATCAGGGCCTCTTCTTCTCTGAGACCTCAGCTCTCAGTGGTGAGAATGTGAACACCGCGTTTCTCAAATTGCTTGAAGAGGTCAACAAGGTTGTCTCCAAAAGGTCGTTGGAATGTAATCATGGGAAGGCCATTAATGGTAACAACAATGTACAGGGCAGTGACAAGTGCATACTACAGAGGTGCATTAGGGCCATGCTGGTGTACGATATAACTAAAAGGCAATCGTTTGATCATGTAGCCAGGTGGGTTGAGGAACTGCGTGCACACGCAGACAGCTCCATCGTGATCATGCTGATTGGGAACAAGGGTGATCTTGTGGACCAAAGAGAGGTACACACGGAAGATGCGGTGGAGTTCGCAGAGGATCAGGGCCTCTTCTTCTCTGAGACCTCAGCTCTCAGTGGTGAGAATGTGAACACCGCGTTTCTCAAATTGCTTGAAGAGGTCAACAAGGTTGTCTCCAAAAGGTCGTTGGAATGTAATCATGGGAAGGCCATTAATGGTAACAACAATGTTGCCACACTTAAAGGATCAAAAATAGATATAATCCCAGGTCCTGAATTGGAGATTAGTGAAATGAAGAAATTATCTTCATGTTCTTGTTGATCTAGCTATTAAAAAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01647	17257	22926	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001647s00032307.1	PF00071.17	Ras	26	186	7.40E-59
Glyur001647s00032307.1	PF00071.17	Ras	216	308	4.00E-25
Glyur001647s00032307.2	PF00071.17	Ras	26	182	2.50E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.102
SRR1783600	control	1.142
SRR1783602	moderate drought stress	0.483
SRR1811619	moderate drought stress	0.551

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.987
DRR006520	Root Summer glycyrrhizin high producing strain	0.848
DRR006521	Root Winter glycyrrhizin high producing strain	0.101
DRR006522	Root Winter glycyrrhizin high producing strain	0.099
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.641
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.642

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.872
SRR2868004	Drought Stress (root)	8.938
SRR2967015	Control (root)	8.093

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.648
SRR9715740	Leaf	1.261
SRR9715741	Leaf	2.185
SRR9715739	Root	0.163
SRR9715742	Root	0.665
SRR9715743	Root	0.574

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.084
SRR8400027	Control - Root	5.339