Gene detail

Gene detail information of Glyur001645s00024582.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19810.1	2.00E-75	Glycosyl hydrolase family protein with chitinase insertion domain
NR	KEH32181.1	0	cysteine-rich RLK (receptor-like kinase) protein [Medicago truncatula]
COG	YP_007146068.1	6.00E-37	chitinase [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|O64781\|Y1639_ARATH	7.00E-14	G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 (Precursor)
trEMBL	tr\|A0A072US50\|A0A072US50_MEDTR	0	Cysteine-rich RLK (Receptor-like kinase) protein {ECO:0000313\|EMBL:KEH32181.1}

Sequence

Transcript Sequence

>Glyur001645s00024582.2
CAAAGGATCGAGACAACAGAAATCATTCACACAATGGCTTCAAGACTTTTTGCTTTCTTCCTTGTTTTCCTCCTCCTCGCATCTCACTCTTTAGCAGACACCCCCTCATGGATGAAAGCCGGTTATTACTATTCCGGCAGTGAAATCTCTGCTTCAGACATAAAATCCACGCTTTTCACTCACCTCCTATGCGCTTTTGCTTTTATAAACTCNACCAGCTACAAGATCTTTATCAACTCTTCGGAGGAGCACAAGTTCTTCACCTTCACCAACACAGTAAAGCTCCAAAACCCATCTGTTTCAACGCTTCTATCCATCTACGGTGGCAGTCGCAGAGAGAACTCTTCAGCTTTTAACTCAATGCTAAACCAATCTTCTTATAGGAAATCTTTCATTGATTCTTCCATCAGAATAGCAAGGAAACATGGGTTTCAGGGCATAGACCTTTATGGGGTTTGGCCAAGGCAGGGTAAGAAAGATCTTTCCAATTTTGCAACCCTTTTGAAGGATTGGCGTGACGCAATAACTTCTGAGGCAAGAAACTCTAGCAAACCAGAGTTAATGTTAGTGATGGCAGGTTATTACCTCAAAGCCTCAAATTCCTTGAGTTACCCCTTCGAATCAATGCAGGAAAACTTGGATTGGGTGCATTTTGTGGCATACGATTACTATCTTCCAGGAAATCGAAATGTCACGGGTTTTCATGCAGCTTTATATGGTCCATCTGGTTGGGAAAGTACTGATTCTGGCATCAAAGAGTGGAGGAGAAGGGGATTTTCATCTACCAAACTGGTAATTGGTTTGCCTTATCATGGATATGCATGGANACTTGTGAACCCAGGAGACAGCAGCGTGGGAGCACCAGCATCTGGACCTGCAATTACAANGGACGNCACCACTTGGGTTAATTTTGACGATGTGGAGGTAATCAAGGAAAAAGTTTCTTATGCAAAGAAAAATGGACTACTTGCTCAAGAAGTAGATGAAGACCATCAAAAGAGGAAGTTGCTGATAATTGTTCTGCTTTCAACTCTGACTGCCGCACTACTGTTGGGAATAGTATTTTGCTACCGCCACCGAGGCATATATTCACCCAAGTACGACGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGCGGAAACAGGACTTCATGTTACTACGGCACACATGAAAATATGACACTTTTGGAATATGCATATGAGTTGTGGAGGGAAGGCAGAGGAGTGGAGTTTATTGACCCGTCATTGGATGACACAACATCACCTTGTAAAATCATGAGATGCATGCAGGTGGCTCTTTTGTGCGTTCAAGAGAACTCTGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTACTCAAGAATGAAGCTGCAGCTATTGATACTCCCAAAACGCCTGCCTTTTCAATAAAAAAAAATGATGGTGAGAATGAAACATCTCACAAACTTTCTTCAACCAATGATTCCATGCTATTGCTATCTTTAGCAATTCTCTTAGCCGTAGCAACCAGAACTTCCACGTGCACACCATCACCATCGTCACGTGCAGATGTGAAAGGCTTGTACTGGTTAGAAAACCTTCTGTTCCCTCCTTCAGCCATAAACACATCACTCTTCACCCACGTTTTCTACGCATTCCTCGCACCCAACAACCTCACCAACGAACTACACATTCCACCCTCCACNGCCACGTCACTCACATCCTTCACCACCACCCTCCGAACCAAAACCCCTCCCGTCACCACCCTCCTCTCCATCGGCGGAGCAGGACCCAACTCCAAACCCTTCCCCCTCATCGCCTCACGCGCCTCCTCACGCGCCNCCTTCATCGCCTCCACCATAGACGCCGCCCGAACCTTCGGCTTCGACGGCGTCGACCTCGACTGGGAGTTCCCCAAAACCCCCGGCGAAATGAGCGACCTCGGAGAGCTACTCCTCGAGTTGCGCCGCGCCGTNGCAGCCGATTCCGCCGTCACCGGACGTCCGCCGTTGATTCTCACCGCCGCCGTGTACTTCGCCGTGAGTATGTCCCTCTCCGGTGAGCCGCGCGTGTATCCGGTGGAGTCCATTAATCAGAACTTGGACTGGGTCAACGTAATGAGCTACGATCTACGCGGGTCGTGGGCAAATGAAACCGGGGCTCCGGCGGGTTTATTCGACCCGAAAGGCAACCTCAGCGCGGCGAGCGGGCTGGTTTCTTGGATCCGGGGCGGGGTTTTACCGGAGAAAATCGTTATGGGTTTGCCGCTTTATGGGAGGACGTGGCGGCTCCGAGAACCGAGTGAGCACGGAATCGGGGCGCCTGCNGTCGGGTCGGGACCCGGGTTGGATGGTGCCATAGCTTATTTTCAAGTGTTGGATTTTAATAACGAAACGGGTGCCAGCGTGGTGCGTGACGTGGACACGGTTTCGGTTTATTCGTATAGCGGAACCTCCTGGATAGGGTACGATGATCCGTTTACGGTGAGGGTCAAGGTTGGGTTTGCTCGGTCTCTTTCGCTTCGTGGCTATTTCTTTTGGGTTGCTGGTCTCGATACTAGTGATTGGAAAATCTCCACACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01645	44322	62570	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH18

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01183	E3.2.1.14	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006032 chitin catabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004568 chitinase activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001645s00024582.2	PF00704.23	Glyco_hydro_18	33	278	2.80E-51
Glyur001645s00024582.2	PF00704.23	Glyco_hydro_18	520	836	7.70E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.180
SRR1783600	control	1.200
SRR1783602	moderate drought stress	1.463
SRR1811619	moderate drought stress	1.397

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.818
DRR006520	Root Summer glycyrrhizin high producing strain	1.637
DRR006521	Root Winter glycyrrhizin high producing strain	4.754
DRR006522	Root Winter glycyrrhizin high producing strain	4.715
DRR006523	Root Summer glycyrrhizin low producing strain	2.866
DRR006524	Root Summer glycyrrhizin low producing strain	2.742
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.511
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.521

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.336
SRR2868004	Drought Stress (root)	1.855
SRR2967015	Control (root)	2.271

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.526
SRR9715740	Leaf	0.657
SRR9715741	Leaf	1.175
SRR9715739	Root	0.948
SRR9715742	Root	1.179
SRR9715743	Root	0.861

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.200
SRR8749028	MeJA induced 9h	0.460
SRR8749029	MeJA induced 9h	0.219
SRR8749030	Uninduced	0.338
SRR8749031	Uninduced	0.135
SRR8749032	Uninduced	0.101

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.055
SRR8400027	Control - Root	1.998